@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1196: (2015-12-21 )
MDISIFREYDIRGIYPTTLDENTAFSIGVELGKIMREYDKSVFVGHDARVHGRFLFEVLSAGLQSSGLKVYDLGLIPTPVAYFAAFNEIDNIQCPNSIMITGSHNPKEYNGFKITLNQNPFYGKDIQALKNTLLNAKHEIKPLKETPEKVNALEAYHRYLIKDFKHLKNLKYKIALDFGNGVGALGLEPILKALNIDFSSLYSDPDGDFPNHHPDPSEAKNLKDLEKHMRENAILIGFAFDGDADRIAMLSSHHIYAGDELAILFAKRLHAQGITPFVIGEVKCSQVMYNAINTFGKTLMYKTGHSNLKIKLKETNAHFAAEMSGHIFFKERYFGYDDALYACLRALELLLEQSPSDLENTIKNLPYSYTTPEEKIAVSEEEKFEIIRNLQEALKNPPSHFPTIKEIISIDGVRVVFEHGFGLIRASNTTPYLVSRFEGKDETTALEYKRALLGLLEKL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G16_X_2(2FKM)
ALGC_PSEAE
[Raw transfer]




G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]




G6P_X_2(1P5G)
ALGC_PSEAE
[Raw transfer]




G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]




M1P_X_2(1PCJ)
ALGC_PSEAE
[Raw transfer]




G1P_X_2(3BKQ)
ALGC_PSEAE
[Raw transfer]




X1P_X_3(2H5A)
ALGC_PSEAE
[Raw transfer]




M6P_X_3(1PCM)
ALGC_PSEAE
[Raw transfer]




R1P_X_2(2H4L)
ALGC_PSEAE
[Raw transfer]




G16_A_2(2FKF)
ALGC_PSEAE
[Raw transfer]




TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]




TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]




TLA_A_3(4MRQ)
ALGC_PSEAE
[Raw transfer]




EDO_A_14(4MRQ)
ALGC_PSEAE
[Raw transfer]




76 Fugue 98.2839% -92 - C2 -1K2Y 2.9 ALGC_PSEAE
55 HHSearch 97.5540% -88 - C2 -1P5D 6.0 ALGC_PSEAE
56 HHSearch 97.5338% -92 - C2 -3UW2 - ? -
15 PsiBlast_PDB 96.5538% -90 - C2 -3UW2 - ? -
1 PsiBlast_PDB 95.5240% -88 - C2 -4MRQ 3.7 ALGC_PSEAE
11 PsiBlast_PDB 95.1939% -87 - C2 -4IL8 - ALGC_PSEAE -
9 PsiBlast_PDB 94.9239% -89 - C2 -2FKF 4.2 ALGC_PSEAE
6 PsiBlast_PDB 94.8039% -85 - C2 -1PCM 5.6 ALGC_PSEAE
12 PsiBlast_PDB 94.7139% -87 - C2 -3BKQ 5.0 ALGC_PSEAE
13 PsiBlast_PDB 94.6739% -89 - C2 -3C04 - ALGC_PSEAE -
4 PsiBlast_PDB 94.6139% -84 - C2 -1P5G 6.0 ALGC_PSEAE
14 PsiBlast_PDB 94.5739% -87 - C2 -1K35 - ALGC_PSEAE -
10 PsiBlast_PDB 94.1839% -86 - C2 -2FKM 5.2 ALGC_PSEAE
5 PsiBlast_PDB 94.1239% -85 - C2 -1PCJ 4.9 ALGC_PSEAE
2 PsiBlast_PDB 94.1039% -89 - C2 -1K2Y 2.9 ALGC_PSEAE
3 PsiBlast_PDB 94.0939% -85 - C2 -1P5D 6.0 ALGC_PSEAE
7 PsiBlast_PDB 94.0239% -87 - C2 -2H4L 4.2 ALGC_PSEAE
8 PsiBlast_PDB 93.8739% -84 - C2 -2H5A 5.3 ALGC_PSEAE
16 PsiBlast_PDB 84.2327% -76 - C2 -1WQA - ? -
54 HHSearch 83.7026% -84 * C2 *1WQA - ? -