@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1203: (2015-12-21 )
MISLIEKAPYIPYPLALYEKLEQRHTLLFESAEIESKAHTKSLLMAKACLKLVCNHNIVTITSLTPNGGAFLQTLSAFFKTPIQDNALTLTYTKDKKIQDEFLKLFEPSPFDALRGLFKSVKTRPKHPFTLFSAGVFSFEMLNFFEDLPHLKANDNTANDFIFYVAQNLIIIDHKEKSAEILGACFDERFKTEIAKELQDLKELVKNIKSDFIPKKAKQSIEVSVSCDDSEFEKKVLFLQEEIKKGEIFQAVLSRSFYMECLEGLSAYYHLKLSNPSPYMFYIKDSDFILFGASPESALKYNALTNTAEIYPIAGTRLRGKDKQGNIDYDLDSKMEFDLQHDYKERAEHIMLVDLARNDMARVSKKRYCDKLLKVDKYSNVMHLVSRVVGELKKGCDSLHAYRSFMNAGTLSGAPKISAIKLIYQLENQRRGSYGGSVGYLNSEGSMDSCITIRSCFVKNNRAVIQAGAGIVLDSVPQNEANETRAKVQALIDAIRKTIS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0GA_A_5(5CWA)
?
[Raw transfer]



ISC_A_5(3HWO)
ENTC_ECOLI
[Raw transfer]



PYR_A_7(2FN1)
?
[Raw transfer]



PYR_A_5(3R75)
?
[Raw transfer]



15P_A_5(4GRH)
?
[Raw transfer]



FMT_E_5(1K0E)
PABB_ECOLI
[Raw transfer]



SAL_A_8(2FN1)
?
[Raw transfer]
34 Fugue 99.2746% -85 - C1 -1I1Q - TRPE_SALTY -
23 HHSearch 97.3146% -83 - C1 -1I1Q - TRPE_SALTY -
35 Fugue 96.6045% -84 - C1 -1I1Q - TRPE_SALTY -
21 PsiBlast_CBE 93.9443% -83 - C1 -1I7Q - TRPE_SERMA -
2 PsiBlast_PDB 93.7943% -83 - C1 -1I7Q - TRPE_SERMA -
1 PsiBlast_PDB 92.8845% -87 - C1 -1I1Q - TRPE_SALTY -
3 PsiBlast_PDB 77.7931% -73 - C1 -5CWA 3.7 ?
22 HHSearch 74.1124% -76 - C1 -1K0E - PABB_ECOLI -
36 Fugue 71.5424% -75 - C1 -1K0E - PABB_ECOLI -
6 PsiBlast_PDB 71.1328% -67 - C1 -1K0G - PABB_ECOLI -
5 PsiBlast_PDB 66.7928% -66 - C1 -1K0E 2.9 PABB_ECOLI
4 PsiBlast_PDB 65.6836% -69 - C1 -1QDL - TRPE_SULSO -
40 Fugue 59.0619% -55 - C1 -3BZM - MENF_ECOLI -
42 Fugue 58.0421% -65 - C1 -3HWO - ENTC_ECOLI -
7 PsiBlast_PDB 57.0634% -72 - C1 -4GRH 2.1 ?
29 HHSearch 57.0326% -57 - C1 -3HWO - ENTC_ECOLI -
39 Fugue 53.9119% -43 - C1 -2EUA - MENF_ECOLI -
30 HHSearch 52.6625% -49 - C1 -3R75 2.7 ?
27 HHSearch 51.2225% -57 * C1 *3OS6 - ? -
9 PsiBlast_PDB 50.4628% -54 - C1 -2FN1 4.0 ?