@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1289: (2015-12-22 )
MSKIAKTAIISPKAEIGKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFIGKNTEIFPFAVLGTQPQDLKYKGEYSELMVGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLLESKDIDFIHALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFILESSRGVAYKSSEYSSEEKQEE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U21_X_2(2QIV)
LPXA_ECOLI
[Raw transfer]




U22_B_5(3I3X)
?
[Raw transfer]




U22_C_6(3I3X)
?
[Raw transfer]




U22_A_4(3I3X)
?
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




FLC_B_4(4E6T)
?
[Raw transfer]




S2N_B_5(3I3A)
?
[Raw transfer]




UD1_A_3(4R37)
?
[Raw transfer]




UD1_A_2(2JF3)
LPXA_ECOLI
[Raw transfer]




CHAIN_B_2(4J09)
LPXA_ECOLI
[Raw transfer]

-

EDO_A_9(4E6U)
?
[Raw transfer]




EDO_A_7(4E6U)
?
[Raw transfer]




CHAIN_X_2(2AQ9)
LPXA_ECOLI
[Raw transfer]

-

1 PsiBlast_PDB 92.1498%-139 - C2 -1J2Z 3.5 LPXA_HELPY
111 HHSearch 90.5996%-141 - C2 -1J2Z 3.5 LPXA_HELPY
115 HHSearch 72.5343%-136 - C2 -3R0S - LPXA_CAMJE -
4 PsiBlast_PDB 71.0942%-126 - C2 -4E6T - ? -
17 PsiBlast_PDB 70.5537%-134 - C2 -3I3A - ? -
34 PsiBlast_CBE 70.0537%-134 - C2 -3I3X 5.3 ?
23 PsiBlast_CBE 70.0142%-124 - C2 -4E6T 2.7 ?
33 PsiBlast_CBE 69.9737%-131 - C2 -3I3X 5.0 ?
2 PsiBlast_PDB 69.8842%-135 - C2 -3R0S - LPXA_CAMJE -
22 PsiBlast_CBE 69.8442%-125 - C2 -4E6T - ? -
35 PsiBlast_CBE 69.6637%-131 - C2 -3I3A - ? -
18 PsiBlast_PDB 69.6637%-132 - C2 -3I3X 4.4 ?
5 PsiBlast_PDB 69.2742%-127 - C2 -4E6U 3.2 ?
32 PsiBlast_CBE 69.1939%-131 - C2 -5DEM - ? -
36 PsiBlast_CBE 69.0937%-132 - C2 -3I3A 4.7 ?
16 PsiBlast_PDB 68.9537%-134 - C2 -3HSQ - ? -
113 HHSearch 68.7940%-128 - C2 -2QIA 7.8 LPXA_ECOLI
6 PsiBlast_PDB 68.5542%-135 - C2 -2AQ9 2.6 LPXA_ECOLI
29 PsiBlast_CBE 68.3639%-132 - C2 -5DEP - ? -
10 PsiBlast_PDB 68.0942%-132 - C2 -2QIV 5.9 LPXA_ECOLI
11 PsiBlast_PDB 67.7942%-134 - C2 -4J09 4.3 LPXA_ECOLI
9 PsiBlast_PDB 67.5342%-133 - C2 -2QIA 7.8 LPXA_ECOLI
7 PsiBlast_PDB 67.4242%-134 - C2 -2JF3 2.9 LPXA_ECOLI
38 PsiBlast_CBE 66.2737%-132 - C2 -4R37 3.6 ?