@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1317: (2015-12-22 )
MKEYKDTLNLNETTFSMKGNLSVNEPKTYAKWQEQQAFKRMQNRKDNHGDFTLHDGPPYANGHLHLGHALNKILKDIVIKREYFKGKKIYYTPGWDCHGLPIEQQILEQLEKEKTSLENPTLFREKCRDHAKKFLEIQKNEFLQLGVLGDFEDPYKTMDFKFEASIYRALVGVAKKGLLKERHKPIYWSYACESALAEAEVEYKMKKSPSIFVAFDLKKEGLEKLKVKKASLVIWTTTPWTLYANVAIALKKDAVYALTQKGYLVAKALHEKLAALGVVDNAITHEFNSNDLEYLVATNPLNQRDSLVVLGDHVSLEDGTGAVHTAPGHGEEDYYLGLKYHLEVLMSVDEKGCYDEGIIHNQLLDKSYLGEHIFKAQKRIIEQLGDSLLLEREIEHSYPHCWRTHKPVIYRATTQWFILMDEPFIQNDGSQKTLREVALDAIEKVEFVPSSGKNRLKTMIENRPDWCLSRQRKWGVPLAFFIDKRTNKPCFESEVLEHVANLFEEKGCDVWWEYNIKDLLPPSYQDNAKHYEKVMHILDVWFDSGSTFKAVLEDYHGEKGQSPSDVVLEGSDQHRGWFQSSLLIGCVLNNQAPFKKVITHGFIVDEKGEKMSKSKGNVVSLDNLLKKHGSDVVRLWVAFNDYQNDLRVSQTFFIQTEQHYKKFRNTLKFLLANFSDMDLKNLERPHDFSPLDHFILEALETISAGVNSAFEEHDLVKGLNILMAFVTNELSGIYLDACKDSLYCDSKNNEKRQAIQMVLLAVASQLCYFLAPILTHTIEEVLEHSQVLRAFLQAKDVFDLKGISVLEKLHLKEFKKPENFEAVLALRSAFNEELDRLKKEGVVKNSLECAIEVKEKALCENLVEELLMVSFVGVAKEKLSETPAFTLFKAPFYKCPRCWRFKSELENTPCKRCEEVLKER

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



MRC_A_4(1QU3)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]
52 Fugue 96.4439% -78 - C1 -1QU2 Error SYI1_STAAU
29 HHSearch 96.3339% -81 * C1 *1FFY Error SYI1_STAAU
3 PsiBlast_PDB 95.0037% -76 - C1 -1FFY Error SYI1_STAAU
1 PsiBlast_PDB 95.0037% -76 - C1 -1QU2 Error SYI1_STAAU
2 PsiBlast_PDB 92.2537% -78 - C1 -1QU3 7.9 SYI1_STAAU
5 PsiBlast_PDB 83.4731% -80 - C1 -1JZS - SYI_THET8 -
6 PsiBlast_PDB 83.2031% -82 - C1 -1ILE - SYI_THET8 -
4 PsiBlast_PDB 82.3231% -81 - C1 -1JZQ - SYI_THET8 -
31 HHSearch 82.1329% -79 - C1 -1ILE - SYI_THET8 -
30 HHSearch 73.5123% -72 - C1 -1GAX - SYV_THETH -
54 Fugue 73.2422% -57 - C1 -1GAX - SYV_THETH -
8 PsiBlast_PDB 72.6323% -72 - C1 -1IVS - SYV_THETH -
7 PsiBlast_PDB 71.5823% -70 - C1 -1GAX - SYV_THETH -
33 HHSearch 70.7819% -67 - C1 -1WKB - SYL_PYRHO -
32 HHSearch 70.2718% -70 - C1 -1WZ2 - SYL_PYRHO -
16 PsiBlast_PDB 68.0020% -60 - C1 -1WKB - SYL_PYRHO -
15 PsiBlast_PDB 67.5920% -61 - C1 -1WZ2 - SYL_PYRHO -
35 HHSearch 61.8023% -60 - C1 -3ZIU - ? -
34 HHSearch 61.6419% -55 - C1 -2V0C - ? -
58 Fugue 61.1418% -54 - C1 -2BYT - ? -