@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1325: (2015-12-22 )
MKASIYDFTLDELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEANNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]



SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]



SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]



SAM_A_5(4PL1)
?
[Raw transfer]



SAM_B_3(4PL1)
?
[Raw transfer]



SF4_A_3(3RFA)
RLMN_ECOLI
[Raw transfer]



SF4_A_6(4PL1)
?
[Raw transfer]
22 Fugue 98.3734%-109 - C4 -3RFA 6.6 RLMN_ECOLI
10 HHSearch 96.9635%-102 - C4 -3RFA 6.6 RLMN_ECOLI
1 PsiBlast_PDB 95.0136% -99 - C4 -3RFA 6.6 RLMN_ECOLI
2 PsiBlast_PDB 94.1035% -89 - C4 -4PL1 7.1 ?
9 PsiBlast_CBE 92.0335% -98 - C4 -4PL1 6.8 ?
12 HHSearch 53.8117% -67 - C4 -2YX0 - TYW1_PYRHO -
14 HHSearch 53.1317% -85 - C4 -2Z2U - TYW1_METJA -
13 HHSearch 51.1417%-106 - C4 -1TV8 - MOAA_STAA8 -
18 HHSearch 50.8018% -84 * C4 *3T7V - PYLB_METBF -
23 Fugue 49.7214% -60 - C4 -3C8F - PFLA_ECOLI -
24 Fugue 49.1413% -55 - C4 -2YX0 - TYW1_PYRHO -
11 HHSearch 47.9412% -60 - C4 -2A5H - KAMA_CLOSU -
19 HHSearch 46.0812% -73 - C4 -1R30 - BIOB_ECOLI -
31 Fugue 44.3419% -38 - C3 -4F3V - ECCA1_MYCTU -
21 HHSearch 42.5111% -93 - C4 -2L69 - ? -
30 Fugue 42.4018% -38 - C1 -3ACP - RPN14_YEAST -
26 Fugue 42.3721% -42 - C2 -4C2E - CTPB_BACSU -
27 Fugue 40.1417% -33 * C3 *4UFC - ? -
20 HHSearch 39.5513% -73 - C4 -1OLT - HEMN_ECOLI -
17 HHSearch 37.8921% -8 - C4 -3CAN - ? -