@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1334: (2015-12-22 )
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPEHRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

WM4_A_2(4N1S)
?
[Raw transfer]



UNU_A_2(4N1N)
?
[Raw transfer]



1P3_A_2(1W8L)
PPIA_HUMAN
[Raw transfer]



WM2_A_2(4N1Q)
?
[Raw transfer]



LSA_A_3(4N1O)
?
[Raw transfer]



GOL_D_4(2HQ6)
CWC27_HUMAN
[Raw transfer]



FMT_D_4(2POE)
?
[Raw transfer]



CHAIN_H_8(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_H_8(4DGC)
PPIA_MACMU
[Raw transfer]
-
CHAIN_B_2(2RMB)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_N_14(2RMB)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_J_10(2RMA)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_C_3(3PMP)
?
[Raw transfer]
-
CHAIN_D_4(2RMA)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_I_9(4DGC)
PPIA_MACMU
[Raw transfer]
-
CHAIN_D_4(1ZKF)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_C_3(1ZKF)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_J_10(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_J_10(3ODI)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_N_14(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_R_18(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_P_16(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_F_6(3ODI)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_F_6(3ODL)
PPIA_HUMAN
[Raw transfer]
-
CHAIN_L_12(3ODI)
PPIA_HUMAN
[Raw transfer]
-
127 HHSearch 91.9541%-103 - C4 -2OK3 - PPIL3_HUMAN -
14 PsiBlast_PDB 89.8241%-102 - C4 -1W74 - PPIA_MYCTU -
4 PsiBlast_PDB 89.4941%-108 - C4 -2A2N - PPWD1_HUMAN -
121 HHSearch 88.3038%-100 - C4 -2A2N - PPWD1_HUMAN -
119 HHSearch 87.9138%-104 - C4 -1ZKC - PPIL2_HUMAN -
21 PsiBlast_CBE 86.7741%-103 - C4 -2A2N - -
22 PsiBlast_CBE 86.3940%-100 - C4 -2OJU - PPIL3_HUMAN -
7 PsiBlast_PDB 84.5740% -96 - C4 -2OK3 - PPIL3_HUMAN -
1 PsiBlast_PDB 84.5240%-109 - C4 -2B71 - ? -
6 PsiBlast_PDB 84.3340% -97 - C4 -1XYH - PPIL3_HUMAN -
9 PsiBlast_PDB 83.5340% -97 - C4 -2OJU - PPIL3_HUMAN -
113 HHSearch 82.1937%-106 - C4 -2FU0 - ? -
17 PsiBlast_PDB 82.0841%-111 - C4 -3ICI - PPIB_HUMAN -
15 PsiBlast_PDB 81.5241%-116 - C4 -1CYN - PPIB_HUMAN -
128 HHSearch 80.6634% -84 - C4 -1IHG - PPID_BOVIN -
13 PsiBlast_PDB 80.5448% -95 - C4 -1H0P - CYP5_CAEEL -
10 PsiBlast_PDB 80.3342%-101 - C4 -2FU0 - ? -
16 PsiBlast_PDB 80.1741%-112 - C4 -3ICH - PPIB_HUMAN -
134 HHSearch 79.8840% -85 * C4 *1A58 - CYP1_BRUMA -
124 HHSearch 79.3133%-105 - C4 -3BKP - ? -
117 HHSearch 77.2336% -98 - C4 -2POE 2.9 ?
42 PsiBlast_CBE 74.8239%-107 - C4 -4DGC 7.2 PPIA_MACMU
120 HHSearch 74.5736% -80 - C4 -2HQ6 2.2 CWC27_HUMAN
69 PsiBlast_CBE 74.0939% -96 - C4 -3ODI 7.8 PPIA_HUMAN
93 PsiBlast_CBE 74.0139% -94 - C4 -2RMA 7.9 PPIA_HUMAN
48 PsiBlast_CBE 73.6539% -91 - C4 -4N1S 2.8 ?
78 PsiBlast_CBE 72.6839% -95 - C4 -2RMB 7.9 PPIA_HUMAN
41 PsiBlast_CBE 72.4639%-109 - C4 -4DGC 6.8 PPIA_MACMU
100 PsiBlast_CBE 72.4539% -90 - C4 -1W8L 3.3 PPIA_HUMAN
84 PsiBlast_CBE 72.4139% -94 - C4 -2RMB 7.9 PPIA_HUMAN
61 PsiBlast_CBE 72.3439% -92 - C4 -3ODL 7.9 PPIA_HUMAN
70 PsiBlast_CBE 72.2739% -95 - C4 -3ODI 7.6 PPIA_HUMAN
53 PsiBlast_CBE 72.1739% -89 - C4 -4N1N 3.1 ?
57 PsiBlast_CBE 72.1339% -93 - C4 -3ODL 7.8 PPIA_HUMAN
60 PsiBlast_CBE 72.0839% -95 - C4 -3ODL 7.2 PPIA_HUMAN
90 PsiBlast_CBE 72.0539% -93 - C4 -2RMA 7.7 PPIA_HUMAN
72 PsiBlast_CBE 71.8439% -95 - C4 -3ODI 7.8 PPIA_HUMAN
95 PsiBlast_CBE 71.4239% -94 - C4 -1ZKF 6.1 PPIA_HUMAN
96 PsiBlast_CBE 71.3339% -89 - C4 -1ZKF 6.3 PPIA_HUMAN
52 PsiBlast_CBE 71.1739% -95 - C4 -4N1O 3.1 ?
50 PsiBlast_CBE 71.0939% -91 - C4 -4N1Q 3.3 ?
135 HHSearch 71.0735% -83 - C4 -3PMP 7.3 ?
56 PsiBlast_CBE 70.4239% -91 - C4 -3ODL 7.5 PPIA_HUMAN
62 PsiBlast_CBE 70.3339% -94 - C4 -3ODL 7.7 PPIA_HUMAN
58 PsiBlast_CBE 69.3739% -89 - C4 -3ODL 7.3 PPIA_HUMAN