@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1358: (2015-12-23 )
MNATNNQVLIEVKDLHSAFGSTIIHRGVSFSVHKGEVMAILGGSGSGKSTLLRCMILLNRPTKGEVLLFGEDIWKLKEAEQQKIFNRCGICFQFGALYSSLTVLENVGVMLEQYGAYSKKIVEEISKMWIERVGLPPRAYHLYPYELSGGMTKRVGIARAMATNPEILFLDEPTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGDLKDFIKKAQTQGLDEGNLFNSTRGEKFWKGM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




16 PsiBlast_PDB 95.4935%-119 - C1 -1B0U - HISP_SALTY -
96 HHSearch 95.0734%-123 - C1 -1B0U - HISP_SALTY -
48 PsiBlast_CBE 94.1535%-138 - C1 -3TIF 6.2 Y796_METJA
22 PsiBlast_CBE 93.9337%-135 - C1 -4YMU 5.4 ?
45 PsiBlast_CBE 93.8336%-136 - C1 -1L2T 6.5 Y796_METJA
46 PsiBlast_CBE 93.6236%-134 - C1 -1L2T 6.5 Y796_METJA
3 PsiBlast_PDB 92.7937%-134 - C1 -4YMU 6.0 ?
4 PsiBlast_PDB 92.6737%-130 - C1 -4YMV 6.0 ?
21 PsiBlast_CBE 92.6437%-129 - C1 -4YMV 6.5 ?
5 PsiBlast_PDB 92.2537%-133 - C1 -4YMW - ? -
88 HHSearch 92.1235%-139 * C1 *3TUI - METN_ECOLI -
1 PsiBlast_PDB 91.9137%-133 - C1 -4YMS - ? -
2 PsiBlast_PDB 91.1037%-133 - C1 -4YMT - ? -
49 PsiBlast_CBE 91.0735%-133 - C1 -3TIF 6.0 Y796_METJA
76 Fugue 90.5132%-122 - C1 -3TUZ - METN_ECOLI -
106 HHSearch 88.1436%-130 - C1 -2PCJ - LOLD_AQUAE -
81 Fugue 86.7730%-109 - C1 -1Z47 - ? -
36 PsiBlast_CBE 86.1433%-128 - C1 -2OLK - ? -
34 PsiBlast_CBE 85.2633%-125 - C1 -2OLK - ? -
33 PsiBlast_CBE 84.4533%-123 - C1 -2OUK - ? -