@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1373: (2015-12-23 )
MIDRKLLLQDFDKVALSLKKRNHAMDDELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENNKIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPKEHFELAQQNGWIDFESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEHMLESASEILKALELPHRFVQLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLVHTLNGSSLAVGRTMVALMENHQQADGSIHIPKALEKYL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]



SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]



SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]



AHX_C_3(1SES)
SYS_THET2
[Raw transfer]



AHX_C_3(1SES)
SYS_THET2
[Raw transfer]



ATP_A_3(3LSS)
?
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



SSA_C_3(1SET)
SYS_THET2
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_D_4(1SES)
SYS_THET2
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_A_3(2ZR2)
SYS_PYRHO
[Raw transfer]



SSA_D_4(1SET)
SYS_THET2
[Raw transfer]



AMP_B_8(2ZR2)
SYS_PYRHO
[Raw transfer]



AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]
32 HHSearch 88.0949% -69 - C1 -2DQ3 6.5 SYS_AQUAE
1 PsiBlast_PDB 87.6948% -68 - C1 -2DQ3 6.5 SYS_AQUAE
34 HHSearch 83.6736% -63 - C1 -2DQ0 6.4 SYS_PYRHO
22 PsiBlast_CBE 82.6634% -61 - C1 -2DQ0 6.5 SYS_PYRHO
21 PsiBlast_CBE 82.4734% -62 - C1 -2ZR2 5.7 SYS_PYRHO
2 PsiBlast_PDB 81.7634% -61 - C1 -2DQ0 6.4 SYS_PYRHO
3 PsiBlast_PDB 81.7034% -62 - C1 -2ZR2 5.8 SYS_PYRHO
33 HHSearch 81.1734% -64 - C1 -1SES 5.9 SYS_THET2
4 PsiBlast_PDB 80.8034% -60 - C1 -2ZR3 - SYS_PYRHO -
35 HHSearch 78.0531% -64 - C1 -3VBB - SYSC_HUMAN -
11 PsiBlast_PDB 77.5031% -61 - C1 -3QO8 - SYSC_CANAL -
12 PsiBlast_PDB 77.4831% -64 - C1 -3QO5 - SYSC_CANAL -
14 PsiBlast_PDB 77.3929% -77 - C1 -3VBB - SYSC_HUMAN -
10 PsiBlast_PDB 77.0231% -61 - C1 -3QO7 - SYSC_CANAL -
13 PsiBlast_PDB 76.9429% -69 - C1 -4L87 - SYSC_HUMAN -
36 HHSearch 76.5430% -63 - C1 -3QNE - SYSC_CANAL -
9 PsiBlast_PDB 76.3531% -62 - C1 -3QNE - SYSC_CANAL -
23 PsiBlast_CBE 75.5637% -69 - C1 -3ERR 5.9 SYS_THET2
6 PsiBlast_PDB 75.3938% -72 - C1 -1SRY - SYS_THET2 -
53 Fugue 75.2327% -63 - C1 -1WLE - SYSM_BOVIN -
37 HHSearch 74.8538% -68 - C1 -3ERR 6.0 DYHC1_MOUSE (first)
8 PsiBlast_PDB 74.8038% -68 - C1 -1SET 6.6 SYS_THET2
5 PsiBlast_PDB 74.5837% -67 - C1 -3ERR 6.0 DYHC1_MOUSE (first)
7 PsiBlast_PDB 74.5238% -69 - C1 -1SES 5.9 SYS_THET2
24 PsiBlast_CBE 74.4838% -66 - C1 -1SET 6.6 SYS_THET2
25 PsiBlast_CBE 73.8638% -65 - C1 -1SES 5.7 SYS_THET2