@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1390: (2015-12-23 )
MTLLVGLGNPTLRYDHTRHNAGFDILDSLVSELDLSFIFSPKHNAYLCVYKDFILLKPQTYMNLSGESVLSAKNFYKTKELLIVHDDLDLPLGVVKFKKGGGNGGHNGLKSIDALCSNSYYRLRVGISKGINITEHVLSKFHNNEEPLKNAAFEHAKNALKFFIESHDFNATQNRFTLKKPLQIES

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_9(4HOY)
?
[Raw transfer]




GOL_A_9(4IKO)
?
[Raw transfer]




GOL_A_9(4JY7)
?
[Raw transfer]




0L1_A_3(4DHW)
PTH_PSEAE
[Raw transfer]




PML_B_4(4DJJ)
PTH_PSEAE
[Raw transfer]




3NZ_A_3(4QBK)
PTH_PSEAE
[Raw transfer]




PML_A_3(4DJJ)
PTH_PSEAE
[Raw transfer]




5AE_A_2(4QD3)
PTH_PSEAE
[Raw transfer]




0L1_B_4(4DHW)
PTH_PSEAE
[Raw transfer]




PEG_B_4(4ERX)
PTH_PSEAE
[Raw transfer]




PEG_A_3(4ERX)
PTH_PSEAE
[Raw transfer]




URI_A_2(4JX9)
?
[Raw transfer]




CTN_A_2(4JWK)
?
[Raw transfer]




EDO_A_4(3NEA)
PTH_FRATT
[Raw transfer]




TLA_A_3(4OLJ)
?
[Raw transfer]




BME_A_10(3KK0)
PTH_MYCS2
[Raw transfer]




5 PsiBlast_PDB 94.8237% -89 - C2 -4HOY Error ?
10 PsiBlast_PDB 94.5837% -85 - C2 -4LWQ - ? -
9 PsiBlast_PDB 94.1637% -84 - C2 -4JX9 4.1 ?
11 PsiBlast_PDB 94.1337% -84 - C2 -4LWR - ? -
13 PsiBlast_PDB 94.0137% -86 - C2 -4OLJ 2.7 ?
12 PsiBlast_PDB 93.9937% -84 - C2 -3WH4 - ? -
6 PsiBlast_PDB 93.9337% -88 - C2 -4IKO Error ?
7 PsiBlast_PDB 93.9037% -89 - C2 -4JY7 Error ?
3 PsiBlast_PDB 93.6737% -87 - C2 -4FOP - ? -
25 PsiBlast_CBE 93.3636% -90 - C2 -4FNO - PTH_PSEAE -
24 PsiBlast_CBE 93.2136% -95 - C2 -4JC4 - PTH_PSEAE -
4 PsiBlast_PDB 93.0737% -90 - C2 -4FOT - ? -
17 PsiBlast_PDB 92.7536% -87 - C2 -4DHW 2.8 PTH_PSEAE
20 PsiBlast_PDB 92.6736% -87 - C2 -4FNO - PTH_PSEAE -
27 PsiBlast_CBE 92.6136% -91 - C2 -4DJJ 3.4 PTH_PSEAE
22 PsiBlast_CBE 92.4536% -90 - C2 -4QD3 3.8 PTH_PSEAE
8 PsiBlast_PDB 92.4337% -86 - C2 -4JWK 3.5 ?
47 HHSearch 92.4239% -88 * C2 *3V2I - PTH_BURTA -
18 PsiBlast_PDB 92.1636% -90 - C2 -4DJJ 3.1 PTH_PSEAE
19 PsiBlast_PDB 92.1036% -91 - C2 -4ERX 3.0 PTH_PSEAE
26 PsiBlast_CBE 91.8836% -89 - C2 -4ERX 2.2 PTH_PSEAE
23 PsiBlast_CBE 91.7936% -91 - C2 -4QBK 6.6 PTH_PSEAE
28 PsiBlast_CBE 91.4336% -87 - C2 -4DHW 3.1 PTH_PSEAE
31 PsiBlast_CBE 88.9232%-105 - C2 -3KK0 2.8 PTH_MYCS2
46 HHSearch 87.3136% -89 - C2 -3NEA 3.0 PTH_FRATT