@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1415: (2015-12-23 )
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEG_A_10(3W2Y)
?
[Raw transfer]




NACID_U_3(1DEW)
APEX1_HUMAN
[Raw transfer]

-

NACID_M_5(4B5M)
?
[Raw transfer]

-

NACID_U_2(4B5J)
?
[Raw transfer]

-

NACID_X_1(1DEW)
APEX1_HUMAN
[Raw transfer]

-

NACID_N_6(4B5M)
?
[Raw transfer]

-

NACID_U_4(4B5G)
?
[Raw transfer]

-

FMT_A_13(3W2Y)
?
[Raw transfer]




MPD_A_9(3G00)
?
[Raw transfer]




NACID_H_5(3GA6)
?
[Raw transfer]

-

GOL_A_15(3G2D)
?
[Raw transfer]




NACID_H_3(3G4T)
?
[Raw transfer]

-

GOL_A_10(3G0R)
?
[Raw transfer]




FMT_A_11(3W2Y)
?
[Raw transfer]




NACID_W_6(4B5G)
?
[Raw transfer]

-

NACID_H_3(3G4T)
?
[Raw transfer]

-

MPD_B_12(3G00)
?
[Raw transfer]




FMT_A_5(3W2Y)
?
[Raw transfer]




NACID_H_3(3G00)
?
[Raw transfer]

-

NACID_M_12(4IEM)
APEX1_HUMAN
[Raw transfer]

-

NACID_H_3(3G00)
?
[Raw transfer]

-

NACID_J_8(4IEM)
APEX1_HUMAN
[Raw transfer]

-

NACID_L_11(4IEM)
APEX1_HUMAN
[Raw transfer]

-

NACID_Y_8(4B5G)
?
[Raw transfer]

-

NACID_P_16(4IEM)
APEX1_HUMAN
[Raw transfer]

-

NACID_O_15(4IEM)
APEX1_HUMAN
[Raw transfer]

-

NACID_X_4(4B5I)
?
[Raw transfer]

-

NACID_G_3(3G0R)
?
[Raw transfer]

-

FMT_A_5(3W2X)
?
[Raw transfer]




NACID_U_2(4B5H)
?
[Raw transfer]

-

NACID_F_3(3GA6)
?
[Raw transfer]

-

NACID_G_3(3G0R)
?
[Raw transfer]

-

NACID_G_2(3G38)
?
[Raw transfer]

-

NACID_I_4(3G3C)
?
[Raw transfer]

-

NACID_I_4(3G3C)
?
[Raw transfer]

-

NACID_V_4(1DE8)
APEX1_HUMAN
[Raw transfer]

-

NACID_V_8(4B5M)
?
[Raw transfer]

-

NACID_W_6(1DE9)
APEX1_HUMAN
[Raw transfer]

-

NACID_K_4(3G2D)
?
[Raw transfer]

-

NACID_I_6(3G2D)
?
[Raw transfer]

-

NACID_Y_2(1DE8)
APEX1_HUMAN
[Raw transfer]

-

NACID_V_3(4B5F)
?
[Raw transfer]

-

NACID_Z_3(1DE9)
APEX1_HUMAN
[Raw transfer]

-

NACID_I_3(3G2C)
?
[Raw transfer]

-

8 PsiBlast_PDB 96.9248%-108 - C1 -3U8U - APEX1_HUMAN -
30 PsiBlast_CBE 96.6448%-102 - C1 -4IEM Error APEX1_HUMAN
24 PsiBlast_CBE 95.7748%-107 - C1 -3U8U - APEX1_HUMAN -
11 PsiBlast_PDB 95.4948%-102 - C1 -4LND - APEX1_HUMAN -
4 PsiBlast_PDB 95.4848%-100 - C1 -4QHE - APEX1_HUMAN -
2 PsiBlast_PDB 95.4148%-105 - C1 -4QH9 - APEX1_HUMAN -
3 PsiBlast_PDB 95.3448%-105 - C1 -4QHD - APEX1_HUMAN -
38 PsiBlast_CBE 95.3348%-104 - C1 -1DEW 5.4 APEX1_HUMAN
10 PsiBlast_PDB 95.0348%-104 - C1 -1BIX - APEX1_HUMAN -
29 PsiBlast_CBE 95.0048%-106 - C1 -4IEM Error APEX1_HUMAN
32 PsiBlast_CBE 94.9748%-102 - C1 -2ISI - APEX1_HUMAN -
35 PsiBlast_CBE 94.9048%-101 - C1 -4LND - APEX1_HUMAN -
31 PsiBlast_CBE 94.6848%-100 - C1 -4IEM Error APEX1_HUMAN
36 PsiBlast_CBE 94.6748%-102 - C1 -1DE9 6.7 APEX1_HUMAN
25 PsiBlast_CBE 94.5548%-106 - C1 -3U8U - APEX1_HUMAN -
6 PsiBlast_PDB 94.4148%-106 - C1 -1E9N - APEX1_HUMAN -
80 HHSearch 94.0850%-110 - C1 -1HD7 - APEX1_HUMAN -
23 PsiBlast_CBE 94.0748%-103 - C1 -3U8U - APEX1_HUMAN -
9 PsiBlast_PDB 93.9648%-103 - C1 -2ISI - APEX1_HUMAN -
28 PsiBlast_CBE 93.9148%-105 - C1 -1E9N - APEX1_HUMAN -
13 PsiBlast_PDB 93.1848%-103 - C1 -1DE9 5.0 APEX1_HUMAN
37 PsiBlast_CBE 93.1748%-102 - C1 -1DE8 6.0 APEX1_HUMAN
14 PsiBlast_PDB 92.5948% -99 - C1 -1DEW 5.6 APEX1_HUMAN
12 PsiBlast_PDB 92.5648%-103 - C1 -1DE8 4.9 APEX1_HUMAN
66 PsiBlast_CBE 88.6439% -91 - C1 -4B5G 3.5 ?
15 PsiBlast_PDB 88.5741%-104 - C1 -3W2X 2.8 ?
64 PsiBlast_CBE 88.0339% -88 - C1 -4B5G 5.5 ?
62 PsiBlast_CBE 87.9339% -89 - C1 -4B5J 5.1 ?
63 PsiBlast_CBE 87.8939% -89 - C1 -4B5I 4.6 ?
65 PsiBlast_CBE 87.8639% -85 - C1 -4B5G 4.9 ?
46 PsiBlast_CBE 87.5440%-103 - C1 -3W2Y 2.8 ?
67 PsiBlast_CBE 87.3439% -89 - C1 -4B5F 5.0 ?
60 PsiBlast_CBE 87.1439% -87 - C1 -4B5M 4.8 ?
47 PsiBlast_CBE 86.6240%-100 - C1 -3W2Y 3.6 ?
59 PsiBlast_CBE 86.5839% -87 - C1 -4B5M 3.3 ?
61 PsiBlast_CBE 86.3439% -86 - C1 -4B5M 4.6 ?
68 PsiBlast_CBE 86.2938% -89 - C1 -4B5H 4.3 ?
53 PsiBlast_CBE 86.1840% -99 - C1 -3G2D 5.4 ?
55 PsiBlast_CBE 86.1540% -99 - C1 -3G0R 7.4 ?
40 PsiBlast_CBE 85.7640% -96 - C1 -3G4T 2.6 ?
56 PsiBlast_CBE 85.6540% -97 - C1 -3G0R 6.2 ?
54 PsiBlast_CBE 85.4940%-100 - C1 -3G2D 6.2 ?
20 PsiBlast_PDB 85.4440% -99 - C1 -3G3C 2.5 ?
58 PsiBlast_CBE 85.4040% -96 - C1 -3G00 4.8 ?
57 PsiBlast_CBE 85.4040% -99 - C1 -3G00 2.7 ?
19 PsiBlast_PDB 85.3340% -94 - C1 -3G2C 2.5 ?
52 PsiBlast_CBE 85.2140%-103 - C1 -3G38 3.4 ?
49 PsiBlast_CBE 84.8740% -97 - C1 -3GA6 3.8 ?
50 PsiBlast_CBE 84.7840% -99 - C1 -3GA6 4.7 ?
39 PsiBlast_CBE 84.3840% -96 - C1 -3G4T 5.3 ?
43 PsiBlast_CBE 84.3340% -96 - C1 -3G3C 4.0 ?