@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1428: (2015-12-23 )
MTIGLVKESMDLESRVALVPDDVALIAQKGVEVLVQNSAGANSGYSNEAYESVGAKIVDSKTAWGQDLVVKCKEPLEHEYPLLKEKATLFSYLDLAYQKSLCEMFINKKITSICTETIAGPKNDYPILAPMSVVAGRLAAHLVQHYLLALEHVKGFMGKGVMLGGLSGAQRAKIVVIGGGVVGMESAKVLSQMGAKVTILELDYAKLQNHPYYHLYDLEVLSVNEANIIQALNGAVGLVGAVLVTASQTPKVILRRHLKYMQKQGVVIDVACDLGGCIETIRQTSHSNPVYVEEDLLHYGVPNMPGIVAKTSSTAYSHASVPYLLYYLEHGLKGFLTANTKIVANTLGGLSAYNGYITQEGIAKAFNLAFKSPLEILKEL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]




NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]




NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]




NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




6MD_A_2(4LMP)
?
[Raw transfer]




2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]




2OP_A_5(2VOJ)
DHA_MYCTU
[Raw transfer]




117 HHSearch 87.6842%-116 - C2 -2EEZ - ? -
1 PsiBlast_PDB 86.7040%-113 - C2 -2EEZ - ? -
115 HHSearch 83.2037%-127 - C2 -1PJC 8.0 ?
6 PsiBlast_PDB 81.9933%-117 - C2 -2VHX - DHA_MYCTU -
22 PsiBlast_CBE 81.1933%-112 - C2 -2VOJ 9.4 DHA_MYCTU
7 PsiBlast_PDB 81.1333%-111 - C2 -2VHZ 11.1 DHA_MYCTU
30 PsiBlast_CBE 81.1133%-116 - C2 -2VHW - DHA_MYCTU -
4 PsiBlast_PDB 80.9133%-118 - C2 -4LMP 4.3 ?
29 PsiBlast_CBE 80.8733%-114 - C2 -2VHW - DHA_MYCTU -
3 PsiBlast_PDB 80.7733%-113 - C2 -2VOJ 5.0 DHA_MYCTU
28 PsiBlast_CBE 80.6433%-115 - C2 -2VHW - DHA_MYCTU -
5 PsiBlast_PDB 80.6433%-115 - C2 -2VHW - DHA_MYCTU -
23 PsiBlast_CBE 80.4933%-112 - C2 -2VHZ 11.1 DHA_MYCTU
21 PsiBlast_CBE 80.4733%-112 - C2 -2VOJ 8.1 DHA_MYCTU
24 PsiBlast_CBE 80.4033%-110 - C2 -2VHX - DHA_MYCTU -
27 PsiBlast_CBE 80.3533%-111 - C2 -2VHW - DHA_MYCTU -
31 PsiBlast_CBE 80.2433%-114 - C2 -2VHV 9.5 DHA_MYCTU
26 PsiBlast_CBE 80.0533%-112 - C2 -2VHW - DHA_MYCTU -
8 PsiBlast_PDB 80.0333%-112 - C2 -2VHV 7.1 DHA_MYCTU
2 PsiBlast_PDB 79.8133%-115 - C2 -2VOE - DHA_MYCTU -
105 Fugue 76.1634%-117 - C2 -1PJC 8.6 ?