@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1429: (2015-12-23 )
MHNACNCNSQRVPFKGFAIDGKDGKFHEWEHSRHAMGEYDVVIDTHFSGICHTDIHFAHSDWLPGIYPMVPGHEIAGVVSAVGSKVTKFKVGDHAGVGCMVNSCGECHTCKHEHQEQWCENNKTIYTYSWEDSFHNNEPTYGGYSNNIVVSENFVISIPKEAPLDKAAPLLCAGITVYSPLKFSKVTKGSKVGIAGFGGLGHMALKYAVAMGAQVSVFARNDKKKQMAQKLGATNFYTSVGECKEKFDLIVSSIPTQYDLLAYTKLLKYGGEVAIVGIPPKDPQRNLDFGDLVLFSGNHKVYGSWIGGVKETQEMMDFSVKHGIYPEIELVTGQEIDATWDKLLNGQGNFRYVIDMKKSMENFKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_7(1YQD)
?
[Raw transfer]



NDP_B_6(3TWO)
?
[Raw transfer]



NDP_A_3(3TWO)
?
[Raw transfer]



NAP_A_7(1YQD)
?
[Raw transfer]



NAP_B_8(1YQD)
?
[Raw transfer]



NDP_A_3(3TWO)
?
[Raw transfer]



NAP_A_7(1YQX)
?
[Raw transfer]



NAP_B_8(1YQX)
?
[Raw transfer]



DTT_B_10(1YQD)
?
[Raw transfer]



DTT_A_9(1YQD)
?
[Raw transfer]
1 PsiBlast_PDB 98.9561%-110 - C1 -3TWO 11.8 ?
21 PsiBlast_CBE 98.8661%-109 - C1 -3TWO 12.0 ?
82 HHSearch 96.3262%-108 - C1 -3TWO 11.8 ?
85 HHSearch 82.2041% -97 - C1 -1YQD 10.9 ?
2 PsiBlast_PDB 80.0339% -94 - C1 -1YQD 10.9 ?
22 PsiBlast_CBE 79.5539% -95 - C1 -1YQX 10.6 ?
3 PsiBlast_PDB 79.3239% -93 - C1 -1YQX 11.6 ?
23 PsiBlast_CBE 79.2839% -94 - C1 -1YQD 11.8 ?
4 PsiBlast_PDB 75.9940%-106 - C1 -1UUF - YAHK_ECOLI -
5 PsiBlast_PDB 73.3136% -91 - C1 -4OAQ - ? -
83 HHSearch 73.2538% -98 - C1 -1UUF - YAHK_ECOLI -
24 PsiBlast_CBE 72.8136% -92 - C1 -4OAQ - ? -
9 PsiBlast_PDB 69.5937% -99 - C1 -2CF6 - CADH5_ARATH -
81 HHSearch 68.9437% -92 - C1 -2CF5 - CADH5_ARATH -
8 PsiBlast_PDB 68.7037% -98 - C1 -2CF5 - CADH5_ARATH -
72 PsiBlast_CBE 65.6132% -95 - C1 -1PIW - ADH6_YEAST -
19 PsiBlast_PDB 63.2732% -93 - C1 -1PIW - ADH6_YEAST -
87 HHSearch 63.0732% -88 - C1 -1PIW - ADH6_YEAST -
18 PsiBlast_PDB 62.5632% -96 - C1 -1Q1N - ADH6_YEAST -
28 PsiBlast_CBE 61.6033% -92 - C1 -3PII - ADH3_GEOSE -