@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0002: (2016-03-11 )
MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNYQTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACE_A_11(4K3L)
DPO3B_ECOLI
[Raw transfer]




743_A_3(3QSB)
DPO3B_ECOLI
[Raw transfer]




SFK_A_9(4K3K)
DPO3B_ECOLI
[Raw transfer]




PHE_A_4(4K3L)
DPO3B_ECOLI
[Raw transfer]




LEU_A_3(4K3L)
DPO3B_ECOLI
[Raw transfer]




322_A_3(3D1G)
DPO3B_ECOLI
[Raw transfer]




1 PsiBlast_PDB 96.4140%-115 - C2 -2AWA - DPO3B_STRPN -
2 PsiBlast_PDB 92.7938%-114 - C2 -2AVT - ? -
22 HHSearch 91.3038%-114 - C2 -2AVT - ? -
23 HHSearch 85.4631%-116 - C2 -3T0P - ? -
21 HHSearch 78.8125%-110 - C2 -1VPK - ? -
16 PsiBlast_PDB 75.1928%-104 - C2 -4K3M - DPO3B_ECOLI -
19 PsiBlast_PDB 74.5228%-105 - C2 -4K3Q - DPO3B_ECOLI -
9 PsiBlast_PDB 74.5028%-102 - C2 -3D1F - DPO3B_ECOLI -
13 PsiBlast_PDB 74.3128%-107 - C2 -3Q4K - DPO3B_ECOLI -
5 PsiBlast_PDB 74.0928%-103 - C2 -1UNN - DPO3B_ECOLI -
15 PsiBlast_PDB 74.0428%-107 - C2 -4K3L 3.7 DPO3B_ECOLI
7 PsiBlast_PDB 73.8428%-100 - C2 -3BEP - DPO3B_ECOLI -
11 PsiBlast_PDB 73.8228%-100 - C2 -3QSB 5.4 DPO3B_ECOLI
17 PsiBlast_PDB 73.6628%-105 - C2 -4K3O - DPO3B_ECOLI -
6 PsiBlast_PDB 73.2828%-101 - C2 -1OK7 - DPO3B_ECOLI -
8 PsiBlast_PDB 73.0428%-103 - C2 -3D1E - DPO3B_ECOLI -
18 PsiBlast_PDB 72.8828%-104 - C2 -4K3P - DPO3B_ECOLI -
10 PsiBlast_PDB 72.4128% -99 - C2 -3D1G 3.5 DPO3B_ECOLI
12 PsiBlast_PDB 72.2128%-103 - C2 -3Q4J - DPO3B_ECOLI -
3 PsiBlast_PDB 72.2028% -99 - C2 -2POL - DPO3B_ECOLI -