@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0006: (2016-03-11 )
MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




1A0_A_2(4HXW)
?
[Raw transfer]




DOO_A_2(4K4O)
?
[Raw transfer]




920_A_2(4KSG)
?
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




883_B_4(4P8O)
GYRB_STAAR
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




883_A_3(4P8O)
GYRB_STAAR
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




08B_B_6(3U2D)
GYRB_STAAU
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




087_B_7(3U2K)
GYRB_STAAU
[Raw transfer]




07N_A_3(3TTZ)
GYRB_STAAU
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




08B_A_3(3U2D)
GYRB_STAAU
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




087_A_3(3U2K)
GYRB_STAAU
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




07N_B_6(3TTZ)
GYRB_STAAU
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




1 PsiBlast_PDB 90.3554% -91 - C4 -4I3H - ? -
2 PsiBlast_PDB 87.0254% -95 - C4 -4JUO - PARE_STRPN -
23 PsiBlast_CBE 71.2047% -62 - C3 -3ZKD - GYRB_MYCTU -
28 PsiBlast_CBE 71.0947% -65 - C3 -3ZKD - GYRB_MYCTU -
3 PsiBlast_PDB 70.8247% -67 - C3 -3ZKB - GYRB_MYCTU -
40 PsiBlast_CBE 70.7147% -65 - C3 -3ZKB - GYRB_MYCTU -
24 PsiBlast_CBE 70.4647% -70 - C3 -3ZKD - GYRB_MYCTU -
42 PsiBlast_CBE 70.2547% -66 - C3 -3ZKB - GYRB_MYCTU -
25 PsiBlast_CBE 69.8847% -68 - C3 -3ZKD - GYRB_MYCTU -
8 PsiBlast_PDB 69.7251% -67 - C3 -4XTJ - GYRB_ECOLI -
26 PsiBlast_CBE 69.6647% -65 - C3 -3ZKD - GYRB_MYCTU -
47 PsiBlast_CBE 69.5245% -72 - C3 -1KIJ 7.6 ?
115 HHSearch 69.4445% -75 - C3 -1KIJ 6.5 ?
5 PsiBlast_PDB 69.1451% -66 - C3 -4WUB - GYRB_ECOLI -
134 Fugue 69.0951% -63 - C3 -1EI1 8.3 GYRB_ECOLI
135 Fugue 69.0851% -63 - C3 -1EI1 8.3 GYRB_ECOLI
9 PsiBlast_PDB 69.0152% -68 - C3 -4PRV - GYRB_ECOLI -
6 PsiBlast_PDB 68.9251% -66 - C3 -4WUC - GYRB_ECOLI -
29 PsiBlast_CBE 68.9047% -68 - C3 -3ZKD - GYRB_MYCTU -
4 PsiBlast_PDB 68.8847% -64 - C3 -3ZKD - GYRB_MYCTU -
14 PsiBlast_PDB 68.3745% -77 - C3 -1KIJ 6.5 ?
43 PsiBlast_CBE 68.2051% -64 - C3 -1EI1 8.6 GYRB_ECOLI
12 PsiBlast_PDB 68.0651% -74 - C3 -4ZVI 6.0 ?
117 HHSearch 61.4935% -65 - C3 -1S16 9.8 PARE_ECOLI
76 PsiBlast_CBE 55.1066% -74 - C3 -4URM 9.6 ?
108 PsiBlast_CBE 54.9257% -80 - C3 -4HYP 7.1 GYRB_ECOLI
107 PsiBlast_CBE 53.6757% -80 - C3 -4HYP 7.3 GYRB_ECOLI
95 PsiBlast_CBE 53.5655% -77 - C3 -1AJ6 5.6 GYRB_ECOLI
109 PsiBlast_CBE 53.2257% -79 - C3 -4HYP 6.8 GYRB_ECOLI
77 PsiBlast_CBE 53.0759% -78 - C3 -5BOD 5.3 ?
80 PsiBlast_CBE 52.8559% -75 - C3 -4MB9 4.7 ?
81 PsiBlast_CBE 52.6259% -76 - C3 -4LPB 6.5 ?
110 PsiBlast_CBE 52.5657% -80 - C3 -4HYP 6.9 GYRB_ECOLI
84 PsiBlast_CBE 52.5159% -74 - C3 -4URN 5.1 ?
75 PsiBlast_CBE 52.4066% -73 - C3 -4URM 9.4 ?
69 PsiBlast_CBE 52.3366% -76 - C3 -4URO 5.9 GYRB_STAAU
74 PsiBlast_CBE 52.2166% -75 - C3 -4URM 9.1 ?
78 PsiBlast_CBE 52.0859% -77 - C3 -4MOT 5.6 ?
72 PsiBlast_CBE 52.0266% -73 - C3 -4URO 6.5 GYRB_STAAU
86 PsiBlast_CBE 51.9959% -76 - C3 -4URN 5.1 ?
106 PsiBlast_CBE 51.8357% -75 - C3 -4KFG 7.5 GYRB_ECOLI
79 PsiBlast_CBE 51.6459% -76 - C3 -4MBC 5.7 ?
82 PsiBlast_CBE 51.6159% -75 - C3 -4EM7 4.9 ?
68 PsiBlast_CBE 51.6172% -74 - C3 -4HXW 7.3 ?
73 PsiBlast_CBE 51.3666% -70 - C3 -4URM 9.5 ?
96 PsiBlast_CBE 51.2857% -79 - C3 -4BAE 7.7 GYRB_MYCSM
91 PsiBlast_CBE 51.2057% -67 - C3 -3TTZ 6.2 GYRB_STAAU
71 PsiBlast_CBE 51.0966% -70 - C3 -4URO 6.5 GYRB_STAAU
67 PsiBlast_CBE 50.8572% -70 - C3 -4K4O 7.9 ?
66 PsiBlast_CBE 50.7672% -68 - C3 -4KSG 8.0 ?
90 PsiBlast_CBE 50.7257% -64 - C3 -3U2D 5.6 GYRB_STAAU
93 PsiBlast_CBE 50.5856% -71 - C3 -4DUH 7.2 GYRB_ECOLI
89 PsiBlast_CBE 50.5757% -67 - C3 -3U2D 5.8 GYRB_STAAU
87 PsiBlast_CBE 50.5257% -67 - C3 -3U2K 7.0 GYRB_STAAU
70 PsiBlast_CBE 50.4866% -68 - C3 -4URO 6.0 GYRB_STAAU
94 PsiBlast_CBE 50.1356% -67 - C3 -4DUH 6.8 GYRB_ECOLI
92 PsiBlast_CBE 49.6557% -65 - C3 -3TTZ 6.4 GYRB_STAAU
88 PsiBlast_CBE 49.5757% -62 - C3 -3U2K 6.6 GYRB_STAAU
85 PsiBlast_CBE 48.8959% -65 - C3 -4URN 5.0 ?
124 HHSearch 48.7944% -71 * C3 *3FV5 5.8 PARE_ECOLI
98 PsiBlast_CBE 48.6656% -67 - C3 -4P8O 7.0 GYRB_STAAR
97 PsiBlast_CBE 48.2256% -69 - C3 -4P8O 6.9 GYRB_STAAR
105 PsiBlast_CBE 48.0457% -73 - C3 -4KFG 7.5 GYRB_ECOLI
139 Fugue 47.0852% -63 - C3 -1EI1 7.5 GYRB_ECOLI
136 Fugue 35.6445% -42 - C3 -1EI1 Error GYRB_ECOLI