@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0007: (2016-03-11 )
MAETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3FOE)
PARC_STRPN
[Raw transfer]
-
22 PsiBlast_CBE 93.4675% -88 - C3 -4DDQ - GYRA_BACSU -
21 PsiBlast_CBE 93.4375% -90 - C3 -4DDQ - GYRA_BACSU -
1 PsiBlast_PDB 93.3975% -85 - C3 -4DDQ - GYRA_BACSU -
23 PsiBlast_CBE 92.7969% -94 - C3 -2XCR 3.8 GYRA_STAAN (first)
2 PsiBlast_PDB 92.6869% -92 - C3 -2XCR 4.3 GYRA_STAAN (first)
25 PsiBlast_CBE 92.6469% -88 - C3 -2XCR 5.7 GYRA_STAAN (first)
24 PsiBlast_CBE 92.4269% -90 - C3 -2XCR 3.2 GYRA_STAAN (first)
26 PsiBlast_CBE 90.5057% -91 - C3 -2Y3P 2.7 GYRA_ECOLI (first)
4 PsiBlast_PDB 90.2657% -87 - C3 -4TMA - ? -
3 PsiBlast_PDB 89.3157% -88 - C3 -2Y3P 2.7 GYRA_ECOLI (first)
6 PsiBlast_PDB 88.1657% -89 - C3 -1AB4 - GYRA_ECOLI -
27 PsiBlast_CBE 87.6857% -89 - C3 -4TMA - ? -
28 PsiBlast_CBE 87.6153% -85 - C3 -3IFZ 3.3 GYRA_MYCTU
59 HHSearch 87.1536% -86 - C4 -1ZVU - PARC_ECOLI -
29 PsiBlast_CBE 86.9154% -83 - C3 -3ILW 2.8 GYRA_MYCTU
8 PsiBlast_PDB 86.6354% -86 - C3 -3ILW 2.7 GYRA_MYCTU
32 PsiBlast_CBE 86.2946% -86 - C3 -4KPF 4.1 PARC_STRPN
20 PsiBlast_PDB 86.1346% -83 - C3 -4KOE 5.6 PARC_STRPN
7 PsiBlast_PDB 86.0753% -89 - C3 -3IFZ 3.4 GYRA_MYCTU
62 HHSearch 85.9653% -85 - C3 -3ILW 2.7 GYRA_MYCTU
34 PsiBlast_CBE 85.9046% -87 - C3 -4KPE 2.9 PARC_STRPN
30 PsiBlast_CBE 85.7046% -88 - C3 -4I3H 6.8 ?
31 PsiBlast_CBE 85.6646% -86 - C3 -4KPF 4.2 PARC_STRPN
19 PsiBlast_PDB 85.6146% -84 - C3 -3RAE 3.6 PARC_STRPN
18 PsiBlast_PDB 85.6046% -83 - C3 -3RAD 5.3 PARC_STRPN
35 PsiBlast_CBE 85.5846% -84 - C3 -4KOE 4.5 PARC_STRPN
17 PsiBlast_PDB 85.5346% -83 - C3 -3RAF 8.0 PARC_STRPN
33 PsiBlast_CBE 85.4946% -85 - C3 -4KPE 4.1 PARC_STRPN
10 PsiBlast_PDB 85.3646% -85 - C3 -4I3H 3.8 ?
36 PsiBlast_CBE 85.2746% -86 - C3 -3RAF 3.8 PARC_STRPN
38 PsiBlast_CBE 85.1746% -88 - C3 -3RAD 3.4 PARC_STRPN
14 PsiBlast_PDB 85.1246% -90 - C3 -3KSA 5.5 PARC_STRPN
37 PsiBlast_CBE 85.0846% -85 - C3 -3RAE 2.9 PARC_STRPN
16 PsiBlast_PDB 84.8746% -88 - C3 -3LTN 3.9 PARC_STRPN
41 PsiBlast_CBE 84.8546% -90 - C3 -3KSA 4.1 PARC_STRPN
13 PsiBlast_PDB 84.7946% -82 - C3 -3K9F 3.1 PARC_STRPN
15 PsiBlast_PDB 84.7446% -91 - C3 -3KSB 4.7 PARC_STRPN
42 PsiBlast_CBE 84.6546% -82 - C3 -3K9F 3.8 PARC_STRPN
39 PsiBlast_CBE 84.5446% -88 - C3 -3LTN 3.7 PARC_STRPN
40 PsiBlast_CBE 84.4046% -91 - C3 -3KSB 4.7 PARC_STRPN
12 PsiBlast_PDB 75.2046% -81 - C3 -3FOF 3.5 PARC_STRPN
11 PsiBlast_PDB 74.6146% -78 - C3 -3FOE Error PARC_STRPN