@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0009: (2016-03-11 )
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_B_10(3WR7)
?
[Raw transfer]



COA_C_8(3WR7)
?
[Raw transfer]



COA_A_6(3WR7)
?
[Raw transfer]



COA_A_6(3WR7)
?
[Raw transfer]



COA_D_12(3WR7)
?
[Raw transfer]



SPM_A_5(4MJ8)
ATDA_VIBCH
[Raw transfer]



GOL_C_13(2VI7)
?
[Raw transfer]



NHE_A_4(4NCZ)
ATDA_VIBCH
[Raw transfer]



EOH_A_6(4MJ8)
ATDA_VIBCH
[Raw transfer]



EOH_C_11(4MJ8)
ATDA_VIBCH
[Raw transfer]



SPM_A_4(4MI4)
ATDA_VIBCH
[Raw transfer]



SPD_A_4(4MHD)
ATDA_VIBCH
[Raw transfer]
61 HHSearch 98.7569%-139 - C2 -3WR7 6.6 ?
23 PsiBlast_CBE 97.5270%-144 - C2 -3WR7 6.1 ?
2 PsiBlast_PDB 96.7270%-141 - C2 -3WR7 6.6 ?
21 PsiBlast_CBE 96.4270%-146 - C2 -3WR7 8.9 ?
22 PsiBlast_CBE 95.4370%-140 - C2 -3WR7 8.7 ?
1 PsiBlast_PDB 91.8270%-142 - C2 -4R9M - ATDA_ECOLI -
28 PsiBlast_CBE 90.0157%-126 - C2 -4R87 - ATDA_VIBCH -
30 PsiBlast_CBE 89.6057%-126 - C2 -4R87 - ATDA_VIBCH -
82 Fugue 89.1956%-124 - C2 -4MI4 2.8 ATDA_VIBCH
47 PsiBlast_CBE 88.8757%-133 - C2 -4MJ8 - ATDA_VIBCH -
63 HHSearch 88.6258%-135 - C2 -3TTH - ? -
41 PsiBlast_CBE 88.3657%-130 - C2 -4R57 - ATDA_VIBCH -
43 PsiBlast_CBE 88.3157%-127 - C2 -4R57 - ATDA_VIBCH -
9 PsiBlast_PDB 88.0257%-127 - C2 -4MI4 - ATDA_VIBCH -
33 PsiBlast_CBE 87.9157%-127 - C2 -4R87 - ATDA_VIBCH -
49 PsiBlast_CBE 87.7757%-130 - C2 -4JLY - ATDA_VIBCH -
45 PsiBlast_CBE 87.5657%-125 - C2 -4R57 - ATDA_VIBCH -
52 PsiBlast_CBE 87.5057%-130 - C2 -4MI4 - ATDA_VIBCH -
12 PsiBlast_PDB 87.2456%-134 - C2 -3TTH - ? -
81 Fugue 87.2256%-124 * C2 *4MHD 2.4 ATDA_VIBCH
5 PsiBlast_PDB 87.0257%-128 - C2 -4MJ8 3.2 ATDA_VIBCH
10 PsiBlast_PDB 86.2356%-129 - C2 -4NCZ 2.2 ATDA_VIBCH
46 PsiBlast_CBE 85.6657%-127 - C2 -4MJ8 2.3 ATDA_VIBCH