@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0011: (2016-03-11 )
MKATAIAHTNVALIKYWGKRDEHLILPANSSLSFTVDKFYTKTTVEWDEKLTQDTFILNNEQKTDAKVARFIDKMREEFGISAKAKITSENHVPTAAGLASSASAFAALALAGSNAAGRKDTKEYISRLARFGSGSASRSVFGDFVIWEKGELADGSDSFAVPFTNKLCDKMSLVVAVVSDKEKKVSSRDGMRLTVETSPFFENWVSAAEIDLEEMKQAILDEDFIKVGEITERNGMKMHATTLGAEPPFTYFQPQSLEIMDAVRELRENGIPAYFTMDAGPNVKVICERANENIVAEKLSGLAKNVLICHAGKEASVVSDEK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FM0_B_5(3QT8)
?
[Raw transfer]




2P0_A_3(3QT6)
?
[Raw transfer]




FM0_A_3(3QT7)
?
[Raw transfer]




2P0_B_4(3QT6)
?
[Raw transfer]




2P0_A_3(4DPY)
?
[Raw transfer]




DP6_A_3(4DU7)
?
[Raw transfer]




FM0_A_3(3QT8)
?
[Raw transfer]




2P0_A_3(4DU8)
?
[Raw transfer]




FM0_B_4(3QT7)
?
[Raw transfer]




2P0_B_4(4DPY)
?
[Raw transfer]




2P0_B_7(4DU8)
?
[Raw transfer]




DP6_B_4(4DU7)
?
[Raw transfer]




GOL_A_4(4DPX)
?
[Raw transfer]




AGS_B_5(4DPT)
?
[Raw transfer]




FMT_B_10(4DPX)
?
[Raw transfer]




AGS_B_6(4DPU)
?
[Raw transfer]




FMT_B_8(4DPX)
?
[Raw transfer]




FMT_B_9(4DPX)
?
[Raw transfer]




AGS_A_4(4DPU)
?
[Raw transfer]




EDO_A_10(2GS8)
?
[Raw transfer]




EDO_A_6(2GS8)
?
[Raw transfer]




EDO_A_6(2GS8)
?
[Raw transfer]




2 PsiBlast_PDB 98.9751% -72 - C1 -2HK3 - ? -
1 PsiBlast_PDB 98.2251% -71 - C1 -2HK2 - ? -
50 HHSearch 95.0646% -63 * C1 *3QT5 - ? -
36 PsiBlast_CBE 92.3148% -59 - C1 -4DPW - ? -
21 PsiBlast_CBE 91.8349% -63 - C1 -4DU7 6.7 ?
4 PsiBlast_PDB 91.4149% -61 - C1 -3QT6 7.1 ?
3 PsiBlast_PDB 91.4149% -61 - C1 -3QT5 - ? -
22 PsiBlast_CBE 91.0049% -59 - C1 -4DPT 7.6 ?
9 PsiBlast_PDB 90.9648% -60 - C1 -4DPU 5.1 ?
5 PsiBlast_PDB 90.8349% -62 - C1 -3QT7 7.7 ?
10 PsiBlast_PDB 90.3548% -60 - C1 -4DPX 2.0 ?
13 PsiBlast_PDB 90.3048% -62 - C1 -4DU8 7.2 ?
7 PsiBlast_PDB 90.1549% -62 - C1 -4DU7 7.2 ?
34 PsiBlast_CBE 90.0548% -58 - C1 -4DPW - ? -
26 PsiBlast_CBE 90.0048% -62 - C1 -4DPX 3.0 ?
25 PsiBlast_CBE 89.9748% -61 - C1 -4DPY 7.4 ?
11 PsiBlast_PDB 89.8948% -61 - C1 -4DPY 7.1 ?
30 PsiBlast_CBE 89.8348% -56 - C1 -4DPW - ? -
24 PsiBlast_CBE 89.6049% -61 - C1 -3QT6 6.8 ?
33 PsiBlast_CBE 89.5348% -55 - C1 -4DPW - ? -
27 PsiBlast_CBE 89.4548% -59 - C1 -4DPU 4.9 ?
23 PsiBlast_CBE 89.0149% -64 - C1 -3QT7 7.6 ?
8 PsiBlast_PDB 88.4748% -62 - C1 -3QT8 7.4 ?
29 PsiBlast_CBE 88.2648% -61 - C1 -4DU8 6.9 ?
49 HHSearch 87.3937% -64 - C1 -2GS8 2.2 ?
28 PsiBlast_CBE 86.0848% -58 - C1 -3QT8 7.3 ?
16 PsiBlast_PDB 81.6936% -59 - C1 -2GS8 3.0 ?