@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0036: (2016-03-11 )
MNKKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQLLKHKTLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDILMARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVFVGDATQVCASTMFMATKLGMDFVQFGPKGFQLREEHLKVAEENCEVSGGSYLITEDVDIALKDADFIYTDVWYGLYEAELSEEERMKTFYPKYQVNKELISKAAPHVKFMHCLPATRGEEVTDEVLDAPYSVVIDEAENRLTAMRALLVYFMNPYVKEAGFAVAEKYDAELELLLRNGAGL

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]




PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




CP_B_18(4H31)
OTC_VIBVU
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




4 PsiBlast_PDB 95.8970%-108 - C7 -4A8T 6.4 PTC_ENTFA
1 PsiBlast_PDB 95.8367%-106 - C7 -4A8H 6.5 PTC_ENTFA
26 PsiBlast_CBE 95.6267%-106 - C7 -4A8H 6.8 PTC_ENTFA
41 PsiBlast_CBE 95.5567%-110 - C7 -4AM8 - PTC_ENTFA -
2 PsiBlast_PDB 95.3567%-107 - C7 -4A8P - PTC_ENTFA -
23 PsiBlast_CBE 95.3267%-108 - C7 -4A8P - PTC_ENTFA -
40 PsiBlast_CBE 95.3167%-107 - C7 -4AM8 - PTC_ENTFA -
5 PsiBlast_PDB 95.0867%-106 - C7 -4AM8 - PTC_ENTFA -
22 PsiBlast_CBE 95.0567%-109 - C7 -4A8P - PTC_ENTFA -
25 PsiBlast_CBE 94.7867%-109 - C7 -4A8P - PTC_ENTFA -
42 PsiBlast_CBE 94.7267%-108 - C7 -4AM8 - PTC_ENTFA -
21 PsiBlast_CBE 94.5767%-111 - C7 -4A8P - PTC_ENTFA -
24 PsiBlast_CBE 94.3467%-107 - C7 -4A8P - PTC_ENTFA -
39 PsiBlast_CBE 94.3367%-108 - C7 -4AM8 - PTC_ENTFA -
38 PsiBlast_CBE 94.1667%-106 - C7 -4AM8 - PTC_ENTFA -
34 PsiBlast_CBE 93.1367%-104 - C7 -3TXX - PTC_ENTFA -
31 PsiBlast_CBE 92.7067%-102 - C7 -3TXX - PTC_ENTFA -
36 PsiBlast_CBE 92.4367%-102 - C7 -3TXX - PTC_ENTFA -
37 PsiBlast_CBE 92.3667%-102 - C7 -3TXX - PTC_ENTFA -
29 PsiBlast_CBE 92.0767% -99 - C7 -3TXX - PTC_ENTFA -
52 PsiBlast_CBE 83.0237%-102 - C7 -4JFR 4.4 OTC_VIBVU
14 PsiBlast_PDB 82.6737%-101 - C7 -4JHX 3.6 OTC_VIBVU
47 PsiBlast_CBE 82.6137% -95 - C7 -4JQO 3.3 OTC_VIBVU
54 PsiBlast_CBE 82.4737% -97 - C7 -4H31 5.0 OTC_VIBVU
15 PsiBlast_PDB 82.4037% -98 - C7 -4JQO 3.4 OTC_VIBVU
12 PsiBlast_PDB 82.1137% -99 - C7 -4H31 5.0 OTC_VIBVU
48 PsiBlast_CBE 82.0237% -97 - C7 -4JQO 3.2 OTC_VIBVU
13 PsiBlast_PDB 81.7137%-100 - C7 -4JFR 4.8 OTC_VIBVU
59 PsiBlast_CBE 81.4638% -99 - C7 -1C9Y 4.7 OTC_HUMAN
58 PsiBlast_CBE 81.4638% -97 - C7 -1EP9 5.0 OTC_HUMAN
43 PsiBlast_CBE 80.5243% -99 - C7 -4NF2 5.0 OTC_BACAN
57 PsiBlast_CBE 80.4438% -97 - C7 -1FVO 3.8 OTC_HUMAN
56 PsiBlast_CBE 80.3938%-100 - C7 -1FVO 3.8 OTC_HUMAN
20 PsiBlast_PDB 80.3638% -98 - C7 -1OTH 6.9 OTC_HUMAN
9 PsiBlast_PDB 80.2843% -98 - C7 -4NF2 4.9 OTC_BACAN
44 PsiBlast_CBE 79.6643% -98 - C7 -4NF2 4.9 OTC_BACAN
113 HHSearch 79.0539% -92 - C7 -1OTH 6.9 OTC_HUMAN
62 PsiBlast_CBE 77.6837% -96 - C7 -1DUV 6.3 OTC1_ECOLI
63 PsiBlast_CBE 76.9237% -95 - C7 -1DUV 6.3 OTC1_ECOLI
61 PsiBlast_CBE 76.6437% -95 - C7 -1DUV 6.4 OTC1_ECOLI
85 PsiBlast_CBE 75.2736% -97 - C7 -2I6U 4.3 OTC_MYCTU
86 PsiBlast_CBE 74.6936% -95 - C7 -2I6U 4.4 OTC_MYCTU
87 PsiBlast_CBE 74.2636% -94 - C7 -2I6U 4.1 OTC_MYCTU
115 HHSearch 73.8536% -91 - C7 -2I6U 4.1 OTC_MYCTU