@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0038: (2016-03-11 )
MRTIDSSSKKDGFRMPGEFEKHAGCYIIWPERPDNWRLGAKPAQKAFVDVATAISHFEPVTVVASSSQYVNARYMLSDEIRVVEMDNDDAWVRDSGPTFVVNDSGDVRGVDWSFNSWGGLVDGLYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIHVDGEGTLVTTEECLLSEGRNPQLSKQQIEMVLKEYLNLEKIIWLKRGIYLDETNGHVDNIFNYVRPGVVALAWTDDETDPQYEISKECFDILSNETDAKGRKLEVHKINVPKPILITDEESKGVDAVEGTLPREEGDRLAASYINYYTANGGVIFPLFGDPNDELAREKLQQLYPNCEVVGVKAREILLGGGNIHCITQQVPR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

211_X_8(3H7C)
AGUA_ARATH
[Raw transfer]




EDO_A_9(1VKP)
AGUA_ARATH
[Raw transfer]




67 HHSearch 98.3055% -86 - C3 -3H7C 3.5 AGUA_ARATH
2 PsiBlast_PDB 96.6453% -86 - C3 -3H7C - AGUA_ARATH -
3 PsiBlast_PDB 96.0653% -82 - C3 -1VKP - AGUA_ARATH -
21 PsiBlast_CBE 96.0558% -78 * C3 *2JER - AGUA_ENTFA -
22 PsiBlast_CBE 95.8058% -81 - C3 -2JER - AGUA_ENTFA -
4 PsiBlast_PDB 95.6853% -79 - C3 -2Q3U - AGUA_ARATH -
81 Fugue 94.8056% -74 - C3 -1VKP 2.3 AGUA_ARATH
68 HHSearch 86.3235% -83 - C3 -1XKN - ? -
5 PsiBlast_PDB 85.3232% -95 - C3 -1XKN - ? -
70 HHSearch 79.8629% -79 - C3 -3HVM - ? -
6 PsiBlast_PDB 79.6928% -83 - C3 -3HVM - ? -
82 Fugue 71.3722% -74 - C3 -4YTB - PAD_PORGI -
1 PsiBlast_PDB 61.9356% 27 - C3 -2EWO - AGUA_STRMU -
9 PsiBlast_PDB 61.5223% -66 - C3 -4YTB - PAD_PORGI -
10 PsiBlast_PDB 61.4423% -62 - C3 -5AK7 - ? -
12 PsiBlast_PDB 61.3322% -65 - C3 -4YTG - PAD_PORGI -
11 PsiBlast_PDB 60.9922% -57 - C3 -5AK8 - ? -
73 HHSearch 52.9817% -43 - C3 -2A9G - ARCA_PSEAE -
69 HHSearch 50.1728% 18 - C3 -1ZBR - ? -
74 HHSearch 49.3215% -36 - C3 -1S9R - ARCA_MYCAR -