@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0040: (2016-03-11 )
MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVDDKGDMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCELERIDYYSQKDFILEGCSIHVDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYFHAQKVIWLKHGFYLDETNGHVDNIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANKTDAKGRTFIIHKLHCPDPVLITQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPKDKDAQELLEKLYPDRKIVGIKAREILLGGGNIHCITQHLPDKSTIRE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_7(2Q3U)
AGUA_ARATH
[Raw transfer]




EDO_A_7(1VKP)
AGUA_ARATH
[Raw transfer]




211_X_8(3H7C)
AGUA_ARATH
[Raw transfer]




211_X_8(3H7C)
AGUA_ARATH
[Raw transfer]




EDO_A_9(1VKP)
AGUA_ARATH
[Raw transfer]




30 HHSearch 98.1452% -89 - C2 -3H7C 3.5 AGUA_ARATH
4 PsiBlast_PDB 97.1950% -89 - C2 -3H7C 2.6 AGUA_ARATH
22 PsiBlast_CBE 96.6152% -88 - C2 -2JER - AGUA_ENTFA -
2 PsiBlast_PDB 96.4250% -86 - C2 -1VKP 3.2 AGUA_ARATH
21 PsiBlast_CBE 95.6752% -88 - C2 -2JER - AGUA_ENTFA -
3 PsiBlast_PDB 95.1150% -83 - C2 -2Q3U 2.1 AGUA_ARATH
44 Fugue 94.1651% -81 - C2 -1VKP 2.3 AGUA_ARATH
31 HHSearch 88.7835% -93 - C2 -1XKN - ? -
5 PsiBlast_PDB 88.5632%-100 - C2 -1XKN - ? -
7 PsiBlast_PDB 80.5627% -90 - C2 -3HVM - ? -
33 HHSearch 77.2928% -86 - C2 -3HVM - ? -
45 Fugue 72.6421% -79 - C2 -4YTB - PAD_PORGI -
1 PsiBlast_PDB 63.2052% 28 - C2 -2EWO - AGUA_STRMU -
10 PsiBlast_PDB 62.2620% -57 - C2 -4YTB - PAD_PORGI -
11 PsiBlast_PDB 62.2520% -56 - C2 -5AK8 - ? -
9 PsiBlast_PDB 62.1320% -55 - C2 -5AK7 - ? -
12 PsiBlast_PDB 61.9220% -55 - C2 -4YTG - PAD_PORGI -
37 HHSearch 54.9514% -47 - C2 -1S9R - ARCA_MYCAR -
32 HHSearch 54.1028% 3 * C2 *1ZBR - ? -
6 PsiBlast_PDB 51.1028% 22 - C2 -1ZBR - ? -