@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0043: (2016-03-11 )
MKMEQALNITSEIGKLQTVLVKRPGSELENITPEYLESLLFDDIPYLKMMQKEHDFFAKTMRDSNIEVLYLEKLAAEALREANNKESFLTKMIKESNQMDESALYVRDYLMSFDEEEMIRKLMSGLKKSEIPERKKKHLNEMMDEQYPFFLDPLPNLYFTRDPAAVIGNGVTINRMFQPARRRESIFIELILKHHPRFSNQDIPVWSGRGEPFSLEGGDELVLNEETVLVGVSERTDARAVERLAESLFNRSPKIKRVLAVEIPETRSFMHLDTVFTMVNFAQFTIHPAIQNQQGELNIYILEKSENGLEITPRRDFQRVIAEVLDEPEIDFIPCGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSRGRGGPRCMTMPLVRENLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIR_B_4(1LXY)
ARCA_MYCAR
[Raw transfer]



CIR_A_3(1LXY)
ARCA_MYCAR
[Raw transfer]



ARG_B_4(1S9R)
ARCA_MYCAR
[Raw transfer]



ARG_A_3(1S9R)
ARCA_MYCAR
[Raw transfer]



ARG_A_3(1S9R)
ARCA_MYCAR
[Raw transfer]
1 PsiBlast_PDB 98.2646% -89 - C6 -4BOF - ARCA_STRPY -
22 PsiBlast_CBE 98.2446% -88 - C6 -4BOF - ARCA_STRPY -
21 PsiBlast_CBE 98.1646% -88 - C6 -4BOF - ARCA_STRPY -
27 PsiBlast_CBE 98.0846% -88 - C6 -4BOF - ARCA_STRPY -
24 PsiBlast_CBE 97.9946% -88 - C6 -4BOF - ARCA_STRPY -
23 PsiBlast_CBE 97.9246% -87 - C6 -4BOF - ARCA_STRPY -
25 PsiBlast_CBE 96.8846% -85 - C6 -4BOF - ARCA_STRPY -
26 PsiBlast_CBE 96.7946% -84 - C6 -4BOF - ARCA_STRPY -
45 HHSearch 90.2835% -82 - C6 -1S9R 3.4 ARCA_MYCAR
42 PsiBlast_CBE 89.6134% -80 - C6 -1S9R 3.0 ARCA_MYCAR
8 PsiBlast_PDB 89.1034% -81 - C6 -1LXY 3.2 ARCA_MYCAR
7 PsiBlast_PDB 88.5934% -80 - C6 -1S9R 3.4 ARCA_MYCAR
43 PsiBlast_CBE 88.2834% -81 - C6 -1LXY 3.3 ARCA_MYCAR
44 HHSearch 87.8433% -86 - C6 -2A9G - ARCA_PSEAE -
6 PsiBlast_PDB 86.0933% -77 - C6 -2AAF - ARCA_PSEAE -
32 PsiBlast_CBE 85.9635% -80 - C6 -4E4J - ? -
39 PsiBlast_CBE 85.8735% -81 - C6 -4E4J - ? -
36 PsiBlast_CBE 85.8135% -80 - C6 -4E4J - ? -
31 PsiBlast_CBE 85.7635% -80 - C6 -4E4J - ? -
33 PsiBlast_CBE 85.7535% -82 - C6 -4E4J - ? -