@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0084: (2016-03-12 )
MKKRQLGNAGLVTSELGFGCMGLNYHRGPAKDRNEMIEVVRTAMDAGITMFDTAEVYGPYTNEELVGEALVGKRNHVQIATKGGFKINGLNNEVDSRPESIKAAVEGSLKRLKTDYIDLYYIHRIDPSIPIEEVAGTIQNLKQEGKILHWGLSEASAKTIRRAHKVEPLAAVESEYSIWWREAEKEVFPVLEELGIGLVAYSPLGRGYLTGKLDINADFNANDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLALAWILDQKPWIVPIPGTTRPSRIEENIASTEIHFDDGARQKIADALSQIEIVGDRYSAAENKRIGK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_3(1GVE)
ARK73_RAT
[Raw transfer]




NDP_B_16(1YNQ)
?
[Raw transfer]




GOL_A_17(1YNP)
?
[Raw transfer]




FLC_B_6(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_D_8(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_C_7(2BP1)
ARK72_HUMAN
[Raw transfer]




FLC_A_5(2BP1)
ARK72_HUMAN
[Raw transfer]




106 HHSearch 90.7834% -81 - C6 -1PYF - IOLS_BACSU -
1 PsiBlast_PDB 89.0841% -89 - C6 -3UYI - PERR_RAUSE -
105 HHSearch 88.0432% -77 - C6 -1PZ1 - GS69_BACSU -
2 PsiBlast_PDB 87.7034% -78 - C6 -1PYF - IOLS_BACSU -
5 PsiBlast_PDB 85.1334% -85 - C6 -1PZ1 - GS69_BACSU -
3 PsiBlast_PDB 84.8834% -77 - C6 -1PZ0 - IOLS_BACSU -
111 HHSearch 82.6929% -80 - C6 -3N6Q - GPR_ECOLI -
112 HHSearch 81.0726% -77 - C6 -3ERP - ? -
12 PsiBlast_PDB 81.0627% -81 - C6 -3ERP - ? -
108 HHSearch 80.6826% -68 - C6 -1LQA - TAS_ECOLI -
10 PsiBlast_PDB 80.6230% -84 - C6 -3N6Q - GPR_ECOLI -
9 PsiBlast_PDB 78.7930% -76 - C6 -4AUB - GPR_ECOLI -
11 PsiBlast_PDB 77.8930% -79 - C6 -4AST - GPR_ECOLI -
4 PsiBlast_PDB 77.1234% -86 - C6 -3N2T - ? -
110 HHSearch 76.2133% -84 - C6 -1YNP - ? -
113 HHSearch 74.9126% -68 - C6 -2BP1 - ARK72_HUMAN -
109 HHSearch 73.8826% -63 - C6 -3EAU - KCAB2_RAT -
123 HHSearch 73.6131% -79 - C6 -3O0K - ? -
122 HHSearch 73.1426% -81 - C6 -3UP8 - ? -
24 PsiBlast_CBE 72.9733% -98 - C6 -4XK2 - ? -
21 PsiBlast_CBE 70.5738% -74 - C6 -1YNQ 5.3 ?
6 PsiBlast_PDB 69.2338% -87 - C6 -1YNP 2.6 ?
37 PsiBlast_CBE 49.5133% -58 - C6 -2BP1 3.0 ARK72_HUMAN
51 PsiBlast_CBE 49.4631% -61 - C6 -1GVE 5.9 ARK73_RAT
36 PsiBlast_CBE 49.4533% -56 - C6 -2BP1 3.9 ARK72_HUMAN
39 PsiBlast_CBE 48.4833% -56 - C6 -2BP1 3.2 ARK72_HUMAN
38 PsiBlast_CBE 48.0733% -58 - C6 -2BP1 3.8 ARK72_HUMAN