@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0107: (2016-03-12 )
MARNKFDIDEELETAFSAAHLKRILVYVKPYQKSIYITLFVILLANVATMIGPYLTKIVIDDTIPNKNMTQLFWIAVIFIVSVIVTGLCMRYRIRSITLIGQDILKDMRTAIFGHLQKLPFSYFDSRPHGKILIRVVNYINMLSDLLSNGLINLISDILSVIVTLGFMLMIDPVLTLYSLALIPVLFVIVMVIKTAQRKAYQVLSNKQSNMNAYIHESIAGIKVTQSFSREEENFEIFTEVSNEYRRSWMKAVKIQFLLWPGVQNIAVMTTCLIYFVGIKGYGVDVSTGTLIAFIGYVGNFWNPVINIGNFYNSLITATTYLERIFETMDVEPDIKDIPNAKKMPPIVGNVDFKDVYFRYEEGVDILKGINFHVDAGESIALVGPTGAGKTTIINLLSRFYNINSGEILVDGENVEEVTLRSLRSQMGVMLQDTFIFSGTIIENIRYGKLDATEEEIIAAAKVVRAHDFISGLKDGYYTEVKERGSTLSAGQRQLISFARALLADPKILILDEATSSIDTQTEILLQEGLERLLEGRTSFIIAHRLSTIKNSSRIFYIDNGRIQEAGSHEELMAQHGYYYNLYQSQFDMLQAL

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




2 PsiBlast_PDB 92.0036%-125 - C2 -4Q4A - Y288_THEMA -
3 PsiBlast_PDB 91.2236%-124 - C2 -4Q4H - Y288_THEMA -
1 PsiBlast_PDB 91.0936%-125 - C2 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 90.9236%-125 - C2 -4Q4J - Y288_THEMA -
21 PsiBlast_CBE 88.6835%-118 - C2 -2ONJ 6.3 Y1866_STAAM
22 PsiBlast_CBE 88.6435%-118 - C2 -2HYD 5.9 Y1866_STAAM
6 PsiBlast_PDB 88.3135%-118 - C2 -2ONJ 6.3 Y1866_STAAM
5 PsiBlast_PDB 88.1035%-118 - C2 -2HYD 5.8 Y1866_STAAM
89 HHSearch 86.4030%-111 - C2 -3B60 - MSBA_SALTY -
110 Fugue 85.5929%-111 - C2 -3B60 - MSBA_SALTY -
10 PsiBlast_PDB 85.3030%-110 - C2 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 82.0131%-109 - C2 -4S0F 2.5 ?
20 PsiBlast_PDB 81.1029%-116 - C2 -4AYW - ABCBA_HUMAN -
92 HHSearch 80.9928%-120 - C2 -3WMG - ? -
18 PsiBlast_PDB 80.6230%-112 - C2 -4AYX 5.5 ABCBA_HUMAN
14 PsiBlast_PDB 80.6231%-104 - C2 -4S0F 5.6 ?
19 PsiBlast_PDB 80.2330%-111 - C2 -3ZDQ - ABCBA_HUMAN -
17 PsiBlast_PDB 80.0430%-110 - C2 -4AYT 6.4 ABCBA_HUMAN
91 HHSearch 79.5428%-108 - C2 -3ZDQ - ABCBA_HUMAN -
12 PsiBlast_PDB 79.4931%-119 - C2 -4RY2 - ? -
55 PsiBlast_CBE 68.0243%-104 - C2 -1XEF 6.9 HLYBP_ECOLX
63 PsiBlast_CBE 67.7539% -97 - C2 -2IXE 6.9 TAP1_RAT
35 PsiBlast_CBE 67.7243%-103 - C2 -2FF7 6.8
99 HHSearch 67.7144%-102 - C2 -2FF7 6.8
54 PsiBlast_CBE 67.7143%-105 - C2 -1XEF 6.7 HLYBP_ECOLX
48 PsiBlast_CBE 67.6843%-107 - C2 -2FGJ 6.2
27 PsiBlast_CBE 67.5843% -87 - C2 -3NH9 6.3
26 PsiBlast_CBE 67.5243% -92 - C2 -3NHA 6.7
44 PsiBlast_CBE 67.4343%-105 - C2 -2FGK 6.3 HLYBP_ECOLX
52 PsiBlast_CBE 67.2143%-103 - C2 -2FFA 6.7
51 PsiBlast_CBE 67.1143% -99 - C2 -2FGJ 6.7 HLYBP_ECOLX
25 PsiBlast_CBE 67.0843% -90 - C2 -3NHB 6.7
46 PsiBlast_CBE 67.0143%-103 - C2 -2FGK 6.9 HLYBP_ECOLX
53 PsiBlast_CBE 66.8843%-101 - C2 -1XEF 6.5
61 PsiBlast_CBE 66.8139% -97 - C2 -2IXF 6.9 TAP1_RAT
56 PsiBlast_CBE 66.8143%-105 - C2 -1XEF 6.3 HLYBP_ECOLX
59 PsiBlast_CBE 66.7939% -97 - C2 -2IXF 7.3 TAP1_RAT
98 HHSearch 66.6338% -96 - C2 -2IXE 7.0 TAP1_RAT
60 PsiBlast_CBE 66.4839% -97 - C2 -2IXF 6.9 TAP1_RAT
49 PsiBlast_CBE 66.2143%-101 - C2 -2FGJ 6.8 HLYBP_ECOLX
37 PsiBlast_CBE 66.1443%-105 - C2 -2PMK 6.9
66 PsiBlast_CBE 65.9538% -93 - C2 -2IXG 6.7
58 PsiBlast_CBE 65.7739% -99 - C2 -2IXF 7.1
67 PsiBlast_CBE 65.5738% -96 - C2 -4K8O 6.2
45 PsiBlast_CBE 65.4743%-104 - C2 -2FGK 6.9 HLYBP_ECOLX
43 PsiBlast_CBE 65.1643%-105 - C2 -2FGK 6.9
50 PsiBlast_CBE 64.7543%-102 - C2 -2FGJ 6.8 HLYBP_ECOLX
42 PsiBlast_CBE 64.6943%-102 - C2 -3B5J 7.1
97 HHSearch 64.6241%-101 - C2 -1MV5 6.8 LMRA_LACLA
95 HHSearch 63.5133% -99 * C2 *3VX4 6.8 ?
40 PsiBlast_CBE 63.3742% -92 - C2 -1MV5 6.5 LMRA_LACLA
41 PsiBlast_CBE 63.0342% -95 - C2 -1MV5 6.8 LMRA_LACLA
39 PsiBlast_CBE 62.7942% -99 - C2 -1MV5 6.1 LMRA_LACLA
65 PsiBlast_CBE 62.7634% -98 - C2 -3VX4 6.8 ?
64 PsiBlast_CBE 62.6934% -97 - C2 -3VX4 6.5 ?
38 PsiBlast_CBE 59.1442% -98 - C2 -1MV5 5.1