@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0108: (2016-03-12 )
MESMKWIWQYVRKYRLLMIGVFILIFIASGISIIYPLLGGKVIDDVVYQNKTNLLIPLLLIMIISTIIRTICRYTYQIMCERIGQNSLFRIREDLYKKLQSLDFDFFNNTRVGDIMARMTGDTDAIRHFVSWVSYNILENVFLFSFAIIIMATIDWKLTLALVIVTPLIAVLTMKMSSKAQPVFYEIRESFSRLNSMVEENISGNRVVKAFAREDFEMKKFHEHNEDFKKRNLDSADVSRTYLPVLDSLAGMLVVITLIFGGYLVIKGQMTLGDLVAFNGFLWMLNGPMRMSGWLINDVQRFIASSFKIQDMMVTDAKIPIHAEKPAPSLQGHVEFKNVSFHFEDDPNTDVLKNISLKASPGQTIAILGETGAGKSTLVNLICRFYDPTSGEILIDGVDARKWHVRELRNHIATVMQDIFLFSDTIEGNIAFGAPDATMEDVRRMARIADADHFIETMPESYDTIVGERGVGLSGGQKQRISLARALLKNPSILILDDTTSAVDMETEVKIQGELKKITENTTTFIIAHRISSVKEADEILILNHGEIIERGTHTSLLAEKGYYFDIYNKQLGTEANVNG

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ANP_A_3(4Q4A)
?
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_A_3(3QF4)
?
[Raw transfer]




ATP_A_5(2PZF)
CFTR_HUMAN
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_5(2BBT)
CFTR_HUMAN
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




6 PsiBlast_PDB 89.1535%-109 - C2 -2ONJ - Y1866_STAAM -
21 PsiBlast_CBE 89.1335%-109 - C2 -2ONJ - Y1866_STAAM -
5 PsiBlast_PDB 89.0035%-108 - C2 -2HYD - Y1866_STAAM -
22 PsiBlast_CBE 88.2135%-108 - C2 -2HYD - Y1866_STAAM -
23 PsiBlast_CBE 87.2832%-114 - C2 -4Q4A 5.7 ?
3 PsiBlast_PDB 86.5834%-117 - C2 -4Q4H - Y288_THEMA -
1 PsiBlast_PDB 86.4434%-120 - C2 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 86.3534%-122 - C2 -4Q4A - Y288_THEMA -
24 PsiBlast_CBE 85.6132%-114 - C2 -3QF4 5.4 ?
4 PsiBlast_PDB 84.8733%-119 - C2 -4Q4J - Y288_THEMA -
105 HHSearch 78.4030%-107 - C2 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 76.8931%-109 - C2 -4AYX - ABCBA_HUMAN -
15 PsiBlast_PDB 76.7928%-105 - C2 -3B60 - MSBA_SALTY -
107 HHSearch 76.5427%-104 - C2 -3WMG - ? -
106 HHSearch 76.1228%-105 - C2 -3B60 - MSBA_SALTY -
125 Fugue 75.2728%-105 - C2 -3B60 - MSBA_SALTY -
12 PsiBlast_PDB 74.9531%-106 - C2 -3ZDQ - ABCBA_HUMAN -
16 PsiBlast_PDB 74.0331%-112 - C2 -4AYW - ABCBA_HUMAN -
10 PsiBlast_PDB 73.5431%-104 - C2 -4AYT - ABCBA_HUMAN -
7 PsiBlast_PDB 73.4335%-107 - C2 -4A82 - Y1866_STAAM -
25 PsiBlast_CBE 72.0431% -97 - C2 -4S0F 2.3 ?
18 PsiBlast_PDB 71.3331% -96 - C2 -4S0F 4.1 ?
31 PsiBlast_CBE 54.8046% -95 - C2 -3NH9 6.3
29 PsiBlast_CBE 53.9046% -95 - C2 -3NHB 6.4
30 PsiBlast_CBE 53.6846% -95 - C2 -3NHA 6.3
33 PsiBlast_CBE 52.8841%-104 - C2 -5DGX 6.4 ?
44 PsiBlast_CBE 51.2145%-102 - C2 -2FGK 6.5 HLYBP_ECOLX
41 PsiBlast_CBE 50.7245%-104 - C2 -2FGK 5.8
65 PsiBlast_CBE 50.7138% -86 - C2 -2IXF 6.3 TAP1_RAT
66 PsiBlast_CBE 50.4938% -86 - C2 -2IXF 7.0 TAP1_RAT
42 PsiBlast_CBE 50.2145%-103 - C2 -2FGK 6.2 HLYBP_ECOLX
43 PsiBlast_CBE 50.1445%-103 - C2 -2FGK 5.3 HLYBP_ECOLX
62 PsiBlast_CBE 49.3338% -87 - C2 -1JJ7 5.1
100 PsiBlast_CBE 34.4931% -87 - C2 -2PZF 7.1 CFTR_HUMAN
102 PsiBlast_CBE 33.1331% -95 - C2 -2BBT 5.1 CFTR_HUMAN
84 PsiBlast_CBE 30.5232% -75 - C2 -4U00 4.5 ?
79 PsiBlast_CBE 30.3531% -72 - C2 -4YMU 4.8 ?
78 PsiBlast_CBE 30.0731% -70 - C2 -4YMU 5.2 ?
77 PsiBlast_CBE 27.8331% -68 - C2 -4YMV 4.2 ?