@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0190: (2016-03-13 )
MKISITAPAKINLSLDALYKREDGYHEVEMVMTTIDLADRLYLERLDEDKIVLDVKAHFIPEDRRNLIYQAALLLKKRFDVKMGVRITIDKHIPVSAGLAGGSSDAAAALKGLNVIWELGLSIEELAEISSEIGSDIAFCVYGGTALATGRGEKISALPNIPGCWIVLAKPSISVSTPTIYKELQVDNVEHPDTQKMIESIKNGDLDGIFAATGNVLESVTLEKNPQVKRIKDRMLAFGAEAALMSGSGPTVFALIKQYSRAKRVYNGLRGFCEEVYMVRPWSEGENDTNINY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDM_B_8(2V2Z)
ISPE_AQUAE
[Raw transfer]




CDM_A_3(2V2Z)
ISPE_AQUAE
[Raw transfer]




CDM_A_2(3PYE)
ISPE_MYCTU
[Raw transfer]




GVS_B_9(2VF3)
ISPE_AQUAE
[Raw transfer]




GVS_A_3(2VF3)
ISPE_AQUAE
[Raw transfer]




GOL_B_15(2V2V)
ISPE_AQUAE
[Raw transfer]




CTN_B_10(2V34)
ISPE_AQUAE
[Raw transfer]




GOL_A_2(3PYD)
ISPE_MYCTU
[Raw transfer]




ATP_A_2(4ED4)
?
[Raw transfer]




ATP_A_3(4DXL)
?
[Raw transfer]




V12_A_11(2V2V)
ISPE_AQUAE
[Raw transfer]




CTN_A_3(2V34)
ISPE_AQUAE
[Raw transfer]




GOL_B_16(2V2V)
ISPE_AQUAE
[Raw transfer]




GOL_B_14(2V2Q)
ISPE_AQUAE
[Raw transfer]




GOL_A_7(2V2Q)
ISPE_AQUAE
[Raw transfer]




C5P_A_2(4EMD)
?
[Raw transfer]




ADP_A_4(2V8P)
ISPE_AQUAE
[Raw transfer]




ADP_B_9(2V8P)
ISPE_AQUAE
[Raw transfer]




ANP_A_2(3PYF)
ISPE_MYCTU
[Raw transfer]




ANP_A_2(3PYF)
ISPE_MYCTU
[Raw transfer]




ADP_A_2(3PYG)
ISPE_MYCTU
[Raw transfer]




1 PsiBlast_PDB 95.8833% -95 - C1 -4DXL 6.1 ?
3 PsiBlast_PDB 95.3333% -97 - C1 -4EMD 5.8 ?
2 PsiBlast_PDB 95.0733% -97 - C1 -4ED4 6.4 ?
28 HHSearch 91.0833% -79 - C1 -3PYF 4.4 ISPE_MYCTU
4 PsiBlast_PDB 90.1433% -88 - C1 -3PYD 2.0 ISPE_MYCTU
5 PsiBlast_PDB 89.8933% -87 - C1 -3PYE 4.3 ISPE_MYCTU
7 PsiBlast_PDB 88.9633% -87 - C1 -3PYG 3.8 ISPE_MYCTU
6 PsiBlast_PDB 88.7933% -85 - C1 -3PYF 4.3 ISPE_MYCTU
30 HHSearch 82.5632% -95 - C1 -1UEK - ISPE_THET8 -
9 PsiBlast_PDB 82.2531% -89 - C1 -2WW4 - ISPE_ECOLI -
31 HHSearch 81.0433% -84 - C1 -2WW4 - ISPE_ECOLI -
21 PsiBlast_CBE 80.7831% -89 - C1 -2WW4 - ISPE_ECOLI -
52 Fugue 79.2433% -83 - C1 -1UEK - ISPE_THET8 -
10 PsiBlast_PDB 78.2531% -88 - C1 -1OJ4 - ISPE_ECOL6 -
8 PsiBlast_PDB 77.2235% -96 - C1 -1UEK - ISPE_THET8 -
29 HHSearch 73.7728% -85 - C1 -2V8P - ISPE_AQUAE -
16 PsiBlast_PDB 71.6231% -82 - C1 -2VF3 5.6 ISPE_AQUAE
53 Fugue 71.4323% -82 - C1 -1H72 - KHSE_METJA -
24 PsiBlast_CBE 71.3431% -81 - C1 -2V34 5.2 ISPE_AQUAE
15 PsiBlast_PDB 71.1231% -80 - C1 -2V8P 5.9 ISPE_AQUAE
14 PsiBlast_PDB 71.0131% -83 - C1 -2V34 5.0 ISPE_AQUAE
13 PsiBlast_PDB 70.9231% -81 - C1 -2V2Z 8.7 ISPE_AQUAE
25 PsiBlast_CBE 70.9031% -82 - C1 -2V2Z 8.4 ISPE_AQUAE
27 PsiBlast_CBE 70.3831% -81 - C1 -2V2Q 3.1 ISPE_AQUAE
11 PsiBlast_PDB 70.2531% -83 - C1 -2V2Q 3.1 ISPE_AQUAE
26 PsiBlast_CBE 70.0431% -79 - C1 -2V2V 3.3 ISPE_AQUAE
22 PsiBlast_CBE 69.9931% -80 - C1 -2VF3 4.8 ISPE_AQUAE
23 PsiBlast_CBE 69.6031% -82 - C1 -2V8P 5.9 ISPE_AQUAE
12 PsiBlast_PDB 69.5631% -81 - C1 -2V2V 6.9 ISPE_AQUAE