@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0194: (2016-03-13 )
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




1 PsiBlast_PDB 95.5254%-102 - C1 -1L2T - Y796_METJA -
21 PsiBlast_CBE 95.4454%-108 - C1 -1L2T - Y796_METJA -
3 PsiBlast_PDB 95.3354%-100 - C1 -1F3O - Y796_METJA -
22 PsiBlast_CBE 93.7753%-110 - C1 -3TIF - Y796_METJA -
2 PsiBlast_PDB 93.7153% -99 - C1 -3TIF - Y796_METJA -
122 HHSearch 92.7353% -97 - C1 -3TIF 5.5 Y796_METJA
118 HHSearch 78.3541% -90 - C1 -2PCJ - LOLD_AQUAE -
12 PsiBlast_PDB 76.5642%-106 - C1 -4YMW - ? -
6 PsiBlast_PDB 75.8742% -87 - C1 -4U00 - ? -
126 Fugue 75.4238% -99 - C1 -3TUZ - METN_ECOLI -
7 PsiBlast_PDB 75.2642% -82 - C1 -4U02 - ? -
25 PsiBlast_CBE 75.2042% -87 - C1 -4U02 - ? -
27 PsiBlast_CBE 74.8542%-104 - C1 -4YMV - ? -
26 PsiBlast_CBE 74.7742% -84 - C1 -4U02 - ? -
24 PsiBlast_CBE 74.7742% -83 - C1 -4U02 - ? -
11 PsiBlast_PDB 74.5742%-105 - C1 -4YMV - ? -
10 PsiBlast_PDB 74.3442%-102 - C1 -4YMU - ? -
110 HHSearch 74.3336% -86 - C1 -1OXX - ? -
104 HHSearch 74.2839% -98 * C1 *3TUI - METN_ECOLI -
8 PsiBlast_PDB 74.1942%-107 - C1 -4YMS - ? -
60 PsiBlast_CBE 73.6037% -95 - C1 -1B0U 5.7 HISP_SALTY
124 HHSearch 72.3738% -96 - C1 -1B0U 5.9 HISP_SALTY
88 PsiBlast_CBE 66.5532% -91 - C1 -4MKI 2.2 ECFA2_CALS4
89 PsiBlast_CBE 66.2732% -92 - C1 -4MKI 2.0 ECFA2_CALS4
94 PsiBlast_CBE 59.6032% -83 - C1 -2FGK 5.2
93 PsiBlast_CBE 59.3932% -86 - C1 -3B5J 4.4
102 PsiBlast_CBE 59.3232% -86 - C1 -2FGJ 4.9 HLYBP_ECOLX
92 PsiBlast_CBE 59.0933% -85 - C1 -2PMK 4.5
99 PsiBlast_CBE 58.9632% -84 - C1 -2FGJ 4.5
96 PsiBlast_CBE 58.9232% -83 - C1 -2FGK 5.3 HLYBP_ECOLX
100 PsiBlast_CBE 58.8332% -87 - C1 -2FGJ 4.9 HLYBP_ECOLX
90 PsiBlast_CBE 58.6133% -84 - C1 -2FF7 4.1
101 PsiBlast_CBE 58.3032% -85 - C1 -2FGJ 5.4 HLYBP_ECOLX
95 PsiBlast_CBE 58.2932% -87 - C1 -2FGK 4.5 HLYBP_ECOLX
103 PsiBlast_CBE 57.8432% -84 - C1 -2FFA 4.2
97 PsiBlast_CBE 57.3332% -85 - C1 -2FGK 5.5 HLYBP_ECOLX
98 PsiBlast_CBE 57.1232% -85 - C1 -2FFB 4.3