@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0214: (2016-03-13 )
LKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVRALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(1GM5)
?
[Raw transfer]



ADP_A_5(1GM5)
?
[Raw transfer]
80 Fugue 86.7036% -79 - C1 -2EYQ - MFD_ECOLI -
21 PsiBlast_CBE 81.6636% -73 - C1 -2EYQ - MFD_ECOLI -
1 PsiBlast_PDB 80.7536% -75 * C1 *2EYQ - MFD_ECOLI -
61 HHSearch 63.3439% -64 - C1 -1GM5 5.3 ?
2 PsiBlast_PDB 63.2737% -64 - C1 -1GM5 5.3 ?
60 HHSearch 62.4920% -62 - C1 -2D7D - UVRB_BACSU -
59 HHSearch 59.0322% -60 - C1 -3HJH - MFD_ECOLI -
81 Fugue 58.4320% -64 - C1 -3HJH - MFD_ECOLI -
12 PsiBlast_PDB 57.4123% -74 - C1 -2NMV - ? -
11 PsiBlast_PDB 57.0523% -77 - C1 -2D7D - UVRB_BACSU -
85 Fugue 57.0116% -38 - C1 -1D2M - UVRB_THET8 -
5 PsiBlast_PDB 56.0924% -75 - C1 -1T5L - UVRB_BACCA -
3 PsiBlast_PDB 55.8824% -59 - C1 -3HJH - MFD_ECOLI -
13 PsiBlast_PDB 55.6423% -74 - C1 -3V4R - UVRB_BACSU -
79 HHSearch 55.2119% -49 - C1 -3FHT - DD19B_HUMAN -
78 HHSearch 54.9018% -49 - C1 -3PEY - DBP5_YEAST -
84 Fugue 54.7720% -30 - C1 -4NL4 - ? -
8 PsiBlast_PDB 54.4923% -70 - C1 -3UWX - ? -
83 Fugue 53.8119% -52 - C1 -1D9X - UVRB_BACCA -
71 HHSearch 53.7620% -50 - C1 -1OYW - RECQ_ECOLI -