@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0220: (2016-03-13 )
MNRFFRNAIFYVIIFLVIIGIVASFNSNKEAAKDISYSEFVSKLEDGKVKSVEIQPDRSVYTINGEFKSSDKSSDDKKTGLGQSKTSSTAFTTYALNSDTSLGDLQKTLDKEDVKMNVVPAKQNSGWVTFLTSIVPFVIIFILFFFLMSQSQGGGGGKVMSFGKSKAKLYNDDKKKVRFTDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPALLRPGRFDRQIMVDRPDVKGREAVLRVHARNKPLAKSVDLKAIAQRTPGFSGADLENLLNEAALVAARSDKKEIDMSDLDEASDRVIAGPAKKNRVISEKERRTVAYHEGGHVIVGMVLDEAEVVHKVTIVPRGQAGGYAVMLPKEDRFLMTKAELMDRITGLLGGRVAEEVTFGEVTTGASNDFERATELARRMVTEWGMSDKIGPLQFTSGNGQVFMGRDFGSDKGYSDKIAYEIDTEVQSLIRYCYDRAKTIITEHQEQHKLIAETLLKVETLDARQIRSLFDDGVMPPDIDTIDVEAEYPSEKDEEVAGKSFEEEREELKEEEKVEETQEEPKEVTSEDAPNIEQTPNDKKDE

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_9(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_B_7(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_C_6(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_5(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_C_8(2R65)
FTSH_HELPY
[Raw transfer]




ADP_B_7(2R65)
FTSH_HELPY
[Raw transfer]




ADP_B_5(3H4M)
PAN_METJA
[Raw transfer]




ATP_A_3(2ZAN)
VPS4B_MOUSE
[Raw transfer]




ADP_A_6(2R65)
FTSH_HELPY
[Raw transfer]




ADP_E_10(2R65)
FTSH_HELPY
[Raw transfer]




ADP_A_4(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_4(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_2(1E32)
TERA_MOUSE
[Raw transfer]




ADP_D_9(2R65)
FTSH_HELPY
[Raw transfer]




ADP_A_3(3D8B)
FIGL1_HUMAN
[Raw transfer]




ANP_B_2(1IY0)
FTSH_THET8
[Raw transfer]




ADP_B_2(1IY1)
FTSH_THET8
[Raw transfer]




126 Fugue 89.5061% -89 - C4 -2CE7 - FTSH_THEMA -
1 PsiBlast_PDB 88.3461% -89 - C4 -3KDS - FTSH_THEMA -
25 PsiBlast_CBE 87.4161% -90 - C4 -2CE7 - FTSH_THEMA -
22 PsiBlast_CBE 87.4061% -91 - C4 -2CEA - FTSH_THEMA -
23 PsiBlast_CBE 87.2661% -93 - C4 -2CEA - FTSH_THEMA -
26 PsiBlast_CBE 86.7061% -91 - C4 -2CE7 - FTSH_THEMA -
35 PsiBlast_CBE 86.3459% -75 - C4 -4EIW - FTSH_THET8 -
28 PsiBlast_CBE 85.9059% -82 - C4 -2DHR - FTSH_THET8 -
40 PsiBlast_CBE 85.5754% -87 - C4 -4WW0 8.4 FTSH_AQUAE
24 PsiBlast_CBE 85.5761% -88 - C4 -2CE7 - FTSH_THEMA -
2 PsiBlast_PDB 85.5059% -80 - C4 -2DHR - FTSH_THET8 -
30 PsiBlast_CBE 85.3859% -82 - C4 -2DHR - FTSH_THET8 -
33 PsiBlast_CBE 85.3759% -75 - C4 -4EIW - FTSH_THET8 -
3 PsiBlast_PDB 85.1659% -74 - C4 -4EIW - FTSH_THET8 -
21 PsiBlast_CBE 84.9261% -90 - C4 -2CEA - FTSH_THEMA -
104 HHSearch 84.9160% -80 - C4 -2DHR - FTSH_THET8 -
39 PsiBlast_CBE 83.8354% -89 - C4 -4WW0 8.2 FTSH_AQUAE
37 PsiBlast_CBE 83.2454% -87 - C4 -4Z8X - FTSH_AQUAE -
5 PsiBlast_PDB 82.4154% -85 - C4 -4Z8X - FTSH_AQUAE -
4 PsiBlast_PDB 81.7554% -90 - C4 -4WW0 8.5 FTSH_AQUAE
12 PsiBlast_PDB 70.8874% -87 - C4 -1IY1 5.5 FTSH_THET8
11 PsiBlast_PDB 68.4974% -85 - C4 -1IY0 5.2 FTSH_THET8
42 PsiBlast_CBE 65.8963% -97 - C4 -2R65 5.5 FTSH_HELPY
9 PsiBlast_PDB 64.4563% -87 - C4 -2R65 6.0 FTSH_HELPY
41 PsiBlast_CBE 63.9763% -82 - C4 -2R65 4.8 FTSH_HELPY
46 PsiBlast_CBE 63.5548% -79 - C4 -3H4M 6.8 PAN_METJA
14 PsiBlast_PDB 63.2348% -79 - C4 -3H4M 6.9 PAN_METJA
43 PsiBlast_CBE 62.5563% -80 - C4 -2R65 6.9 FTSH_HELPY
44 PsiBlast_CBE 62.4663% -82 - C4 -2R65 5.7 FTSH_HELPY
45 PsiBlast_CBE 61.6848% -80 - C4 -3H4M 6.2 PAN_METJA
120 HHSearch 60.9845% -76 - C4 -3H4M 6.9 PAN_METJA
113 HHSearch 58.7552% -84 - C4 -2QZ4 8.0
13 PsiBlast_PDB 58.5351% -90 - C4 -2QZ4 8.0
90 PsiBlast_CBE 58.0444% -84 - C4 -1E32 6.3 TERA_MOUSE
117 HHSearch 54.5838% -87 - C4 -2ZAN 7.1 VPS4B_MOUSE
123 HHSearch 54.3235% -81 - C4 -3D8B 8.1 FIGL1_HUMAN