@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0223: (2016-03-13 )
MTIANSITDLIGKTPIVKLNRLPEAGSADVYVKLEFQNPGGSVKDRIANAMIESAEKSGALKPGDTIIEPTSGNTGIGLAMVAAAKGYQAIFVMPETMSLERRKLLQAYGAKLVLTPGPDGMKGAIAKAEELAKENNYFVPQQFHNPANPAVHEETTGPEIVEAFGKDGLDAFIAGVGTGGTVTGVGHVLKKNYPDVKIYALEPEESPVLSGGSPSPHKIQGIGAGFVPDTLDTKVYDGILKVSSEDALETAREVAKKEGILVGISSGATIKAALDLAKELGAGKKVLAIVASNGERYLSTPLYNFED

Atome Classification :

(71 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PUS_A_3(3X44)
?
[Raw transfer]




PUS_A_3(3X44)
?
[Raw transfer]




PDA_A_2(2Q3D)
CYSK_MYCTU
[Raw transfer]




P1T_A_3(3PC3)
?
[Raw transfer]




PUS_B_4(3X44)
?
[Raw transfer]




P1T_A_3(3PC3)
?
[Raw transfer]




P1T_X_3(5DBH)
?
[Raw transfer]




CIT_A_4(2V03)
CYSM_ECOLI
[Raw transfer]




AA5_A_2(1Z7Y)
CYSK1_ARATH
[Raw transfer]




CYS_A_2(4LMB)
?
[Raw transfer]




ILE_A_3(4IL5)
?
[Raw transfer]




AWH_A_3(3ZEI)
CYSK_MYCTU
[Raw transfer]




MET_B_4(4JBL)
?
[Raw transfer]




4AT_A_4(2EFY)
?
[Raw transfer]




OAS_X_3(4ZU6)
CYSK_HAEIN
[Raw transfer]




4AT_B_6(2EFY)
?
[Raw transfer]




PLP_D_4(1D6S)
CYSK_SALTY
[Raw transfer]




CHAIN_C_2(4JBN)
?
[Raw transfer]

-

PLP_E_5(1D6S)
CYSK_SALTY
[Raw transfer]




4MV_A_3(2ECO)
?
[Raw transfer]




PLP_B_10(3BM5)
?
[Raw transfer]




FGA_B_11(4AIR)
?
[Raw transfer]




PLP_B_5(4L0D)
CBS_HUMAN
[Raw transfer]




PLP_A_3(4L0D)
CBS_HUMAN
[Raw transfer]




PLP_A_3(1VE1)
?
[Raw transfer]




PLP_A_5(2PQM)
?
[Raw transfer]




PLP_B_6(2PQM)
?
[Raw transfer]




PLP_B_5(2EFY)
?
[Raw transfer]




PLP_A_3(2EFY)
?
[Raw transfer]




PLP_A_9(3BM5)
?
[Raw transfer]




PLP_A_3(1OAS)
CYSK_SALTY
[Raw transfer]




PLP_C_7(3VBE)
?
[Raw transfer]




PLP_A_5(2PQM)
?
[Raw transfer]




PLP_A_3(1VE1)
?
[Raw transfer]




PLP_A_2(2ECO)
?
[Raw transfer]




PLP_C_14(1FCJ)
CYSK_SALTY
[Raw transfer]




PLP_B_4(1OAS)
CYSK_SALTY
[Raw transfer]




PLP_B_7(4LMA)
?
[Raw transfer]




PLP_A_13(1FCJ)
CYSK_SALTY
[Raw transfer]




PLP_A_4(4LMB)
?
[Raw transfer]




PLP_D_16(1FCJ)
CYSK_SALTY
[Raw transfer]




PLP_A_5(3VBE)
?
[Raw transfer]




PLP_A_2(2ECQ)
?
[Raw transfer]




PLP_A_5(4LMA)
?
[Raw transfer]




PLP_B_5(4AEC)
CYSKM_ARATH
[Raw transfer]




PLP_A_3(1OAS)
CYSK_SALTY
[Raw transfer]




PLP_B_15(1FCJ)
CYSK_SALTY
[Raw transfer]




PLP_A_3(4AEC)
CYSKM_ARATH
[Raw transfer]




PLP_B_18(4COO)
CBS_HUMAN
[Raw transfer]




PLP_A_5(4COO)
CBS_HUMAN
[Raw transfer]




PLP_A_3(1Z7W)
CYSK1_ARATH
[Raw transfer]




PLP_A_3(1Z7W)
CYSK1_ARATH
[Raw transfer]




PLP_B_6(3VBE)
?
[Raw transfer]




PLP_X_4(4ZU6)
CYSK_HAEIN
[Raw transfer]




PLP_C_9(2BHS)
CYSM_ECOLI
[Raw transfer]




PLP_D_11(2BHS)
CYSM_ECOLI
[Raw transfer]




MPD_A_6(2Q3B)
CYSK_MYCTU
[Raw transfer]




PLP_A_7(2BHS)
CYSM_ECOLI
[Raw transfer]




PLP_A_4(3DWG)
CYSM_MYCTU
[Raw transfer]




PLP_D_8(3VBE)
?
[Raw transfer]




PLP_B_8(2BHS)
CYSM_ECOLI
[Raw transfer]




MPD_A_6(2Q3B)
CYSK_MYCTU
[Raw transfer]




3HL_A_3(2ECQ)
?
[Raw transfer]




CYS_A_3(4LMB)
?
[Raw transfer]




CHAIN_P_3(1Y7L)
CYSK_HAEIN
[Raw transfer]

-

MPD_A_4(2Q3B)
CYSK_MYCTU
[Raw transfer]




FGA_B_9(4AIR)
?
[Raw transfer]




CHAIN_B_2(3TBH)
?
[Raw transfer]

-

CHAIN_B_2(3TBH)
?
[Raw transfer]

-

CHAIN_B_2(3T4P)
?
[Raw transfer]

-

CHAIN_B_3(2ISQ)
CYSK1_ARATH
[Raw transfer]

-

102 HHSearch 92.9673% -95 - C2 -2EGU - ? -
1 PsiBlast_PDB 92.8573% -96 - C2 -2EGU - ? -
19 PsiBlast_PDB 90.0051% -72 - C2 -3X43 - ? -
121 Fugue 89.9553% -75 - C2 -1OAS 3.8 CYSK_SALTY
109 HHSearch 89.4252% -72 * C2 *1VE1 3.6 ?
20 PsiBlast_PDB 89.3253% -72 - C2 -1OAS 3.8 CYSK_SALTY
16 PsiBlast_PDB 89.2552% -74 - C2 -2ECO 4.2 ?
34 PsiBlast_CBE 89.2251% -75 - C2 -3X43 - ? -
35 PsiBlast_CBE 89.2053% -73 - C2 -1OAS 3.9 CYSK_SALTY
27 PsiBlast_CBE 89.1952% -72 - C2 -2EFY 3.3 ?
29 PsiBlast_CBE 89.1651% -74 - C2 -3X43 - ? -
106 HHSearch 89.1455% -70 - C2 -1Z7W 4.3 CYSK1_ARATH
18 PsiBlast_PDB 89.1252% -72 - C2 -2EFY 4.6 ?
17 PsiBlast_PDB 89.0852% -72 - C2 -2ECQ 4.0 ?
42 PsiBlast_CBE 88.9453% -63 - C2 -1D6S 4.9 CYSK_SALTY
15 PsiBlast_PDB 88.8052% -73 - C2 -1VE1 3.6 ?
33 PsiBlast_CBE 88.7951% -73 - C2 -3X43 - ? -
111 HHSearch 88.6555% -69 - C2 -1O58 - ? -
32 PsiBlast_CBE 88.5251% -70 - C2 -3X43 - ? -
30 PsiBlast_CBE 88.4951% -74 - C2 -3X43 - ? -
10 PsiBlast_PDB 88.4755% -68 - C2 -1Z7W 4.3 CYSK1_ARATH
103 HHSearch 88.4358% -71 - C2 -2Q3B 3.0 CYSK_MYCTU
3 PsiBlast_PDB 88.4058% -65 - C2 -2Q3D 8.2 CYSK_MYCTU
43 PsiBlast_CBE 88.3453% -62 - C2 -1D6S 5.0 CYSK_SALTY
41 PsiBlast_CBE 88.2851% -66 - C2 -3X44 7.3 ?
11 PsiBlast_PDB 88.1855% -68 - C2 -2ISQ 8.6 CYSK1_ARATH
40 PsiBlast_CBE 88.0951% -66 - C2 -3X44 7.0 ?
13 PsiBlast_PDB 87.9555% -64 - C2 -1Z7Y 3.8 CYSK1_ARATH
47 PsiBlast_CBE 87.6651% -73 - C2 -3VBE 4.2 ?
4 PsiBlast_PDB 87.6258% -67 - C2 -2Q3B 3.0 CYSK_MYCTU
38 PsiBlast_CBE 87.5753% -68 - C2 -1FCJ 3.7 CYSK_SALTY
2 PsiBlast_PDB 87.5758% -69 - C2 -3ZEI 5.9 CYSK_MYCTU
36 PsiBlast_CBE 87.5053% -69 - C2 -1FCJ 3.7 CYSK_SALTY
45 PsiBlast_CBE 87.3451% -70 - C2 -3VBE 3.8 ?
44 PsiBlast_CBE 87.1151% -70 - C2 -3VBE 4.2 ?
104 HHSearch 87.0450% -72 - C2 -1Y7L 5.8 CYSK_HAEIN
101 HHSearch 86.9850% -65 - C2 -3X44 7.3 ?
37 PsiBlast_CBE 86.9853% -66 - C2 -1FCJ 3.5 CYSK_SALTY
50 PsiBlast_CBE 86.8850% -68 - C2 -3T4P 6.7 ?
46 PsiBlast_CBE 86.8551% -70 - C2 -3VBE 4.3 ?
107 HHSearch 86.7750% -65 - C2 -3TBH 4.8 ?
49 PsiBlast_CBE 86.5450% -66 - C2 -3TBH 4.8 ?
39 PsiBlast_CBE 86.5453% -69 - C2 -1FCJ 3.6 CYSK_SALTY
14 PsiBlast_PDB 86.1952% -56 - C2 -4LMB 4.0 ?
61 PsiBlast_CBE 85.7847% -70 - C2 -2PQM 3.7 ?
68 PsiBlast_CBE 85.7046% -73 - C2 -4JBN 3.1 ?
25 PsiBlast_CBE 85.5952% -65 - C2 -4AEC 3.8 CYSKM_ARATH
65 PsiBlast_CBE 85.5446% -70 - C2 -4IL5 3.3 ?
12 PsiBlast_PDB 85.4552% -65 - C2 -4LMA 4.1 ?
62 PsiBlast_CBE 85.3050% -62 - C2 -5DBH 7.7 ?
60 PsiBlast_CBE 85.0047% -74 - C2 -2PQM 3.5 ?
110 HHSearch 84.8347% -72 - C2 -2PQM 3.6 ?
59 PsiBlast_CBE 84.7147% -70 - C2 -3BM5 3.9 ?
9 PsiBlast_PDB 84.2852% -66 - C2 -4AEC 4.4 CYSKM_ARATH
26 PsiBlast_CBE 84.0652% -63 - C2 -4LMA 4.3 ?
93 PsiBlast_CBE 83.5441% -63 - C2 -4COO 4.6 CBS_HUMAN
66 PsiBlast_CBE 83.4846% -64 - C2 -4JBL 3.9 ?
92 PsiBlast_CBE 83.4541% -63 - C2 -4COO 4.9 CBS_HUMAN
48 PsiBlast_CBE 83.3649% -80 - C2 -4AIR 3.3 ?
58 PsiBlast_CBE 83.3247% -63 - C2 -3BM5 3.7 ?
99 PsiBlast_CBE 83.3041% -63 - C2 -4L0D 3.8 CBS_HUMAN
98 PsiBlast_CBE 83.1541% -65 - C2 -4L0D 3.5 CBS_HUMAN
108 HHSearch 82.8342% -64 - C2 -3DWG 3.7 CYSM_MYCTU
123 Fugue 81.3240% -56 - C2 -3PC3 8.3 ?
113 HHSearch 79.4539% -59 - C2 -3PC3 8.2 ?
71 PsiBlast_CBE 78.5543% -69 - C2 -2BHS 3.5 CYSM_ECOLI
81 PsiBlast_CBE 78.4042% -68 - C2 -2V03 3.2 CYSM_ECOLI
70 PsiBlast_CBE 78.3943% -68 - C2 -2BHS 3.6 CYSM_ECOLI
72 PsiBlast_CBE 77.9043% -66 - C2 -2BHS 3.4 CYSM_ECOLI
69 PsiBlast_CBE 77.4943% -67 - C2 -2BHS 3.5 CYSM_ECOLI
63 PsiBlast_CBE 53.5250% 27 - C2 -4ZU6 3.8 CYSK_HAEIN