@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0232: (2016-03-13 )
MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYRKYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVTDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIVTLLTAQLTKRLAERDIHVKLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDGKLEVRKKDAPKKKTTSKKVKAK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MNT_C_8(4LJ7)

[Raw transfer]




ACP_A_2(4LJ9)

[Raw transfer]




ACP_A_2(4LJA)

[Raw transfer]




MNT_A_4(4LJ7)
CLPB_THET8
[Raw transfer]




MNT_B_6(4LJ7)
CLPB_THET8
[Raw transfer]




ADP_A_2(4LJ5)

[Raw transfer]




ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]




ADP_D_6(4FD2)

[Raw transfer]




ADP_A_4(4FCW)
CLPB_THET8
[Raw transfer]




ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]




ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]




1 PsiBlast_PDB 87.8374% -92 - C4 -3PXI - CLPC_BACSU -
108 HHSearch 86.9977% -90 - C4 -3PXI - CLPC_BACSU -
133 Fugue 81.4849% -74 * C3 *1QVR - CLPB_THET8 -
107 HHSearch 77.2741% -80 - C4 -1R6B - CLPA_ECOLI -
22 PsiBlast_CBE 64.9358% -96 - C2 -4LJ7 7.0 CLPB_THET8
5 PsiBlast_PDB 63.1958% -94 - C2 -4LJ7 8.8 CLPB_THET8
2 PsiBlast_PDB 62.9478% -70 - C4 -3PXG - CLPC_BACSU -
4 PsiBlast_PDB 62.3158% -92 - C2 -4LJ5 6.6
21 PsiBlast_CBE 62.2958% -96 - C2 -4LJ7 7.9
109 HHSearch 62.2279% -67 - C4 -3PXG - CLPC_BACSU -
6 PsiBlast_PDB 62.2058% -89 - C2 -4LJ9 6.7
11 PsiBlast_PDB 61.8357% -90 - C2 -4FCW 7.4 CLPB_THET8
3 PsiBlast_PDB 61.7258% -92 * C2 *4LJ4 - -
10 PsiBlast_PDB 61.3757% -89 - C2 -4FCV 6.6 CLPB_THET8
7 PsiBlast_PDB 61.1858% -93 - C2 -4LJA 7.2
24 PsiBlast_CBE 60.6058% -89 - C2 -4FD2 6.1 CLPB_THET8
9 PsiBlast_PDB 60.2058% -90 - C2 -4FD2 6.6 CLPB_THET8
8 PsiBlast_PDB 60.0958%-100 - C2 -4FCT - CLPB_THET8 -
23 PsiBlast_CBE 59.4958% -90 - C2 -4FD2 6.1
14 PsiBlast_PDB 55.8537% -61 - C4 -1R6B - CLPA_ECOLI -