@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0235: (2016-03-13 )
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCGTGRVVLVHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRVMNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CTP_A_5(1VPA)
ISPD_THEMA
[Raw transfer]




CTP_B_6(1VPA)
ISPD_THEMA
[Raw transfer]




CTP_A_5(1VPA)
ISPD_THEMA
[Raw transfer]




CTP_A_4(1I52)
ISPD_ECOLI
[Raw transfer]




CTP_A_4(2XWL)
?
[Raw transfer]




CTP_A_4(1I52)
ISPD_ECOLI
[Raw transfer]




CTP_A_4(2XWL)
?
[Raw transfer]




CDM_A_3(1INI)
ISPD_ECOLI
[Raw transfer]




CDM_A_3(1INI)
ISPD_ECOLI
[Raw transfer]




CTP_A_4(1I52)
ISPD_ECOLI
[Raw transfer]




CTP_B_5(3Q7U)
ISPD_MYCTU
[Raw transfer]




CTP_B_6(2XWL)
?
[Raw transfer]




CTP_A_4(3Q7U)
ISPD_MYCTU
[Raw transfer]




CTP_B_6(2XWN)
ISPD_MYCTU
[Raw transfer]




C5P_A_3(2XWM)
?
[Raw transfer]




CTP_A_5(4ZDQ)
ISPD_BURTA
[Raw transfer]




CDM_A_3(3Q80)
ISPD_MYCTU
[Raw transfer]




CDM_B_7(3Q80)
ISPD_MYCTU
[Raw transfer]




C5P_A_4(1W57)
ISPDF_CAMJE
[Raw transfer]




C_A_4(1W55)
ISPDF_CAMJE
[Raw transfer]




ACY_B_8(1VPA)
ISPD_THEMA
[Raw transfer]




PGR_B_5(3N9W)
ISPD_ECOLI
[Raw transfer]




ACY_A_7(1VPA)
ISPD_THEMA
[Raw transfer]




3 PsiBlast_PDB 92.1135%-136 - C1 -2YC3 - ISPD_ARATH -
30 HHSearch 90.9935%-128 - C1 -2YC3 - ISPD_ARATH -
9 PsiBlast_PDB 88.4137%-111 - C1 -1I52 7.1 ISPD_ECOLI
29 HHSearch 88.3535%-102 - C1 -1I52 7.1 ISPD_ECOLI
11 PsiBlast_PDB 88.3036%-103 - C1 -2XWL 8.2 ?
53 Fugue 88.0436%-108 - C1 -1I52 7.1 ISPD_ECOLI
10 PsiBlast_PDB 87.7537%-113 - C1 -1INI 7.7 ISPD_ECOLI
24 PsiBlast_CBE 87.7436% -99 - C1 -2XWL 7.5 ?
12 PsiBlast_PDB 87.2036%-103 - C1 -2XWM 5.5 ?
4 PsiBlast_PDB 86.8435%-139 - C1 -2YC5 - ISPD_ARATH -
6 PsiBlast_PDB 86.3335%-145 - C1 -4NAL - ISPD_ARATH -
52 Fugue 85.2735%-104 * C1 *1INI 7.7 ISPD_ECOLI
35 HHSearch 84.9433%-114 - C1 -1VPA 6.9 ISPD_THEMA
1 PsiBlast_PDB 84.9336%-134 - C1 -1W77 - ISPD_ARATH -
21 PsiBlast_CBE 84.8537%-115 - C1 -3N9W 4.1 ISPD_ECOLI
5 PsiBlast_PDB 84.7835%-147 - C1 -4NAK - ISPD_ARATH -
2 PsiBlast_PDB 83.8736%-132 - C1 -4NAI - ISPD_ARATH -
8 PsiBlast_PDB 83.5835%-143 - C1 -2YCM - ISPD_ARATH -
32 HHSearch 83.4835%-105 - C1 -2XWL 8.2 ?
7 PsiBlast_PDB 83.4035%-148 - C1 -4NAN - ISPD_ARATH -
25 PsiBlast_CBE 83.2232%-119 - C1 -1VPA 7.2 ISPD_THEMA
14 PsiBlast_PDB 80.8232%-115 - C1 -1VPA 6.9 ISPD_THEMA
17 PsiBlast_PDB 76.0432%-108 - C1 -3Q7U 7.7 ISPD_MYCTU
18 PsiBlast_PDB 75.8332%-108 - C1 -3Q80 6.9 ISPD_MYCTU
28 PsiBlast_CBE 74.5932%-103 - C1 -2XWN 7.7 ISPD_MYCTU
13 PsiBlast_PDB 73.9837% -93 - C1 -4ZDQ 6.4 ISPD_BURTA
26 PsiBlast_CBE 73.2132%-109 - C1 -3Q80 6.6 ISPD_MYCTU
27 PsiBlast_CBE 72.2132%-101 - C1 -3Q7U 7.5 ISPD_MYCTU