@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0238: (2016-03-13 )
MPTRLKEDIATIIKNDPATKSFFDAFLTNPGLHALWWHRVANFFYRHKMVLFGKVLSQNARFWTNIEIHPGATIGRRLFIDHGAGIVIGETAEIGDDVTIFHGVTLGGTGKDCGKRHPTVGDGALVSAGAKVLGPVEIGAGARIGAGAVVLKDVPPGATVVGIPAKVVRLNGRTVGHAVPKMDELTLRIAELENIVEKLLKEKE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CYS_A_6(4H7O)
?
[Raw transfer]



CYS_A_4(4H7O)
?
[Raw transfer]



CYS_B_4(1T3D)
CYSE_ECOLI
[Raw transfer]



SER_B_5(4N69)
?
[Raw transfer]



SER_A_3(4N69)
?
[Raw transfer]



CYS_B_8(4H7O)
?
[Raw transfer]



COA_K_11(1SST)
CYSE_HAEIN
[Raw transfer]



COA_G_7(1SST)
CYSE_HAEIN
[Raw transfer]



COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]



COA_K_11(1SST)
CYSE_HAEIN
[Raw transfer]



CYS_A_2(3P47)
?
[Raw transfer]



SER_A_2(3Q1X)
?
[Raw transfer]



COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]
2 PsiBlast_PDB 87.7143%-113 - C1 -4HZD - ? -
3 PsiBlast_PDB 87.5244%-108 - C1 -4HZC - ? -
23 PsiBlast_CBE 87.0043%-114 - C1 -4HZD - ? -
30 PsiBlast_CBE 86.5644%-109 - C1 -4HZC - ? -
117 Fugue 85.1639%-110 - C1 -1SSQ - CYSE_HAEIN -
21 PsiBlast_CBE 83.2343% -98 - C1 -4H7O 2.7 ?
42 PsiBlast_CBE 83.0741%-118 - C1 -3GVD - ? -
50 PsiBlast_CBE 82.5341%-116 - C1 -3GVD - ? -
22 PsiBlast_CBE 81.4543% -95 - C1 -4H7O 2.9 ?
1 PsiBlast_PDB 81.3043% -97 - C1 -4H7O 2.8 ?
51 PsiBlast_CBE 81.0641%-118 - C1 -3GVD - ? -
49 PsiBlast_CBE 81.0441%-116 - C1 -3GVD - ? -
48 PsiBlast_CBE 81.0241%-114 - C1 -3GVD - ? -
43 PsiBlast_CBE 80.9541%-115 - C1 -3GVD - ? -
8 PsiBlast_PDB 80.8641%-117 - C1 -3GVD - ? -
7 PsiBlast_PDB 80.5943%-118 - C1 -1T3D 3.5 CYSE_ECOLI
44 PsiBlast_CBE 80.3141%-113 - C1 -3GVD - ? -
126 HHSearch 79.7139%-109 - C1 -1SSQ - CYSE_HAEIN -
52 PsiBlast_CBE 79.5741%-112 - C1 -3GVD - ? -
53 PsiBlast_CBE 78.7041%-120 - C1 -1SSQ - CYSE_HAEIN -
41 PsiBlast_CBE 78.2745%-116 - C1 -4N69 3.5 ?
4 PsiBlast_PDB 77.6545%-114 - C1 -4N69 3.5 ?
54 PsiBlast_CBE 77.4541%-129 - C1 -1SST 4.7 CYSE_HAEIN
14 PsiBlast_PDB 75.3739%-124 - C1 -3Q1X 2.4 ?
10 PsiBlast_PDB 75.2641%-126 - C1 -1SST 3.9 CYSE_HAEIN
13 PsiBlast_PDB 75.1739%-122 - C1 -3P47 2.8 ?
55 PsiBlast_CBE 74.6941%-124 - C1 -1SST 4.5 CYSE_HAEIN