@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0258: (2016-03-13 )
LSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFLDEGLREMFRDISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLINKETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQIIPNLENGVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEKEINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKMLSADEEEIEMRDMDDDDFTNQNDAFNIVQPENAAAEKTE

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_I_7(4MQ9)
RPOB_THET8
[Raw transfer]
-
NACID_R_18(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_8(4OIO)
RPOB_THET8
[Raw transfer]
-
NACID_R_18(4YLN)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_8(4OIP)
RPOB_THET8
[Raw transfer]
-
NACID_H_13(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4Q5S)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIR)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIN)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_I_9(4YLN)
RPOB_ECOLI
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_R_18(4YLO)
RPOB_ECOLI
[Raw transfer]
-
NACID_G_1(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2PPB)
RPOB_THET8
[Raw transfer]
-
CHAIN_M_13(4MEX)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLO)
RPOB_ECOLI
[Raw transfer]
-
CHAIN_N_14(4MEX)
RPOB_ECOLI
[Raw transfer]
-
NACID_U_21(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_Z_16(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_I_13(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOH)
RPOB_THET8
[Raw transfer]
-
NACID_S_19(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_R_16(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_R_17(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(4G7Z)
RPOB_THET8
[Raw transfer]
-
99 Fugue 84.9553% -57 - C5 -3LU0 - RPOB_ECOLI -
80 PsiBlast_CBE 84.2447% -61 - C5 -4MEX 2.0 RPOB_ECOLI
108 HHSearch 84.1855% -56 - C5 -2A6H - RPOB_THET8 -
81 PsiBlast_CBE 83.5947% -59 - C5 -4MEX 2.6 RPOB_ECOLI
34 PsiBlast_CBE 82.7556% -56 - C5 -4G7H 3.6 RPOB_THET8
26 PsiBlast_CBE 82.7356% -57 - C5 -4OIQ 3.4 RPOB_THET8
79 PsiBlast_CBE 82.5747% -61 - C5 -4XSX - ? -
30 PsiBlast_CBE 82.5456% -54 - C5 -4MQ9 5.1 RPOB_THET8
27 PsiBlast_CBE 82.4556% -56 - C5 -4OIP 3.8 RPOB_THET8
17 PsiBlast_PDB 82.4456% -56 - C5 -4G7H 3.5 RPOB_THET8
78 PsiBlast_CBE 82.4047% -62 - C5 -4XSX - ? -
75 PsiBlast_CBE 82.3647% -59 - C5 -4XSZ - ? -
83 PsiBlast_CBE 82.3047% -60 - C5 -4KN7 - RPOB_ECOLI -
53 PsiBlast_CBE 82.2447% -59 - C5 -4ZH4 - ? -
18 PsiBlast_PDB 82.2056% -53 - C5 -4G7O 3.9 RPOB_THET8
67 PsiBlast_CBE 82.1947% -58 - C5 -4YG2 - RPOC_ECOLI -
55 PsiBlast_CBE 82.1847% -58 - C5 -4ZH3 - ? -
77 PsiBlast_CBE 82.1747% -59 - C5 -4XSY - ? -
73 PsiBlast_CBE 82.1647% -57 - C5 -4YFK - RPOB_ECO24 -
85 PsiBlast_CBE 82.1447% -59 - C5 -4KN4 - RPOB_ECOLI -
33 PsiBlast_CBE 82.1156% -52 - C5 -4G7O 3.6 RPOB_THET8
24 PsiBlast_CBE 82.0956% -57 - C5 -4Q4Z 2.7 RPOB_THET8
29 PsiBlast_CBE 82.0256% -57 - C5 -4OIN 4.0 RPOB_THET8
23 PsiBlast_CBE 81.8256% -55 - C5 -4Q5S 2.0 RPOB_THET8
19 PsiBlast_PDB 81.7356% -52 - C5 -4G7Z 3.5 RPOB_THET8
66 PsiBlast_CBE 81.6647% -60 - C5 -4YLN 1.6 RPOB_ECOLI
25 PsiBlast_CBE 81.6456% -56 - C5 -4OIR 3.7 RPOB_THET8
28 PsiBlast_CBE 81.2356% -53 - C5 -4OIO 3.1 RPOB_THET8
32 PsiBlast_CBE 81.2256% -53 - C5 -4G7Z 3.6 RPOB_THET8
65 PsiBlast_CBE 81.0947% -55 - C5 -4YLN 2.6 RPOB_ECOLI
62 PsiBlast_CBE 80.9647% -54 - C5 -4YLO 1.5 RPOB_ECOLI
60 PsiBlast_CBE 80.9647% -55 - C5 -4YLP 2.0 RPOB_ECOLI
59 PsiBlast_CBE 80.5547% -53 - C5 -4YLP 2.7 RPOB_ECOLI
15 PsiBlast_PDB 80.1456% -56 - C5 -3AOH 2.5 RPOB_THET8
63 PsiBlast_CBE 79.9847% -59 - C5 -4YLO 2.6 RPOB_ECOLI
10 PsiBlast_PDB 79.8056% -52 - C5 -2O5I 3.9 RPOB_THET8
22 PsiBlast_CBE 79.7556% -55 - C5 -4WQS 3.4 RPOB_THET8
41 PsiBlast_CBE 79.6556% -51 - C5 -2O5I 4.1 RPOB_THET8
39 PsiBlast_CBE 79.5956% -50 - C5 -2PPB 3.8 RPOB_THET8
40 PsiBlast_CBE 79.5356% -52 - C5 -2O5J 4.2 RPOB_THET8
12 PsiBlast_PDB 79.3356% -51 - C5 -2PPB 4.8 RPOB_THET8
16 PsiBlast_PDB 79.2956% -54 - C5 -3AOI 2.3 RPOB_THET8
11 PsiBlast_PDB 79.2856% -53 - C5 -2O5J 3.4 RPOB_THET8
21 PsiBlast_CBE 79.2256% -54 - C5 -4WQS 4.2 RPOB_THET8
37 PsiBlast_CBE 79.2156% -55 - C5 -3AOI 2.3 RPOB_THET8
38 PsiBlast_CBE 79.1256% -55 - C5 -3AOI 2.4 RPOB_THET8