@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0260: (2016-03-13 )
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACY_C_3(1ZRN)
HAD_PSEUY
[Raw transfer]




1 PsiBlast_PDB 98.6197%-119 - C2 -3IB6 - ? -
45 HHSearch 96.9995%-124 - C2 -3IB6 - ? -
53 HHSearch 60.9719% -74 - C2 -3L8H - GMHBB_BORBR -
8 PsiBlast_PDB 58.2826% -73 - C2 -2GFH - NANP_MOUSE -
57 HHSearch 57.7722% -88 - C2 -2YMM - ? -
49 HHSearch 57.6822% -93 - C2 -1ZRN 3.1 HAD_PSEUY
48 HHSearch 57.0624% -88 * C2 *2NO4 - HAD4_BURCE -
10 PsiBlast_PDB 56.9725% -71 - C2 -2W4M - NANP_HUMAN -
9 PsiBlast_PDB 56.9625% -76 - C2 -4KNW - NANP_HUMAN -
5 PsiBlast_PDB 56.6527% -73 - C2 -2OM6 - ? -
60 HHSearch 56.4021% -91 - C2 -3UM9 - ? -
44 Fugue 55.9219% -70 - C2 -2GMW - GMHBB_ECOLI -
12 PsiBlast_PDB 55.7525% -69 - C2 -4KNV - NANP_HUMAN -
47 HHSearch 55.6819% -87 - C2 -3MC1 - ? -
63 HHSearch 55.5924% -78 - C2 -2HOQ - Y1655_PYRHO -
61 HHSearch 54.9627% -73 - C2 -2OM6 - ? -
37 Fugue 54.7218% -92 - C2 -1U7P - MGDP1_MOUSE -
18 PsiBlast_PDB 53.8625% -85 - C2 -1ZRN - HAD_PSEUY -
17 PsiBlast_PDB 53.3625% -83 - C2 -1ZRM - HAD_PSEUY -
50 HHSearch 53.2115% -84 - C2 -3UMB - ? -