@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0278: (2016-03-14 )
LAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKSTTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKQVYDHPVNMFVAGFIGSPAMNFFKGRLEGSNFIGDDFTIEVPEGKLKLLKDRGFDGKNIVFGIRPEDIHDEPIVIEANPGYTFKATTIVAELTGAEFMLHSRVGTHEFVARVDARSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_B_6(3C4J)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




3 PsiBlast_PDB 95.0251%-111 - C2 -2D62 - ? -
1 PsiBlast_PDB 92.2152%-110 - C2 -4TQU - ? -
2 PsiBlast_PDB 90.9252%-107 - C2 -4TQV - ? -
4 PsiBlast_PDB 88.5248%-120 - C2 -1V43 - ? -
98 HHSearch 87.9447%-114 - C2 -1V43 - ? -
5 PsiBlast_PDB 85.5848%-121 - C2 -1VCI - ? -
102 HHSearch 83.6344% -98 - C2 -3RLF - MALK_ECOLI -
34 PsiBlast_CBE 81.4645%-103 - C2 -2YYZ - ? -
101 HHSearch 81.2245%-104 - C2 -2YYZ - ? -
99 HHSearch 81.2039% -99 - C2 -2IT1 - ? -
11 PsiBlast_PDB 79.8951%-106 - C2 -3PUY - MALK_ECOLI -
17 PsiBlast_PDB 79.4451%-109 - C2 -3RLF - MALK_ECOLI -
20 PsiBlast_PDB 78.8451%-108 - C2 -4KI0 - ? -
16 PsiBlast_PDB 78.6651%-106 - C2 -3PUX - MALK_ECOLI -
14 PsiBlast_PDB 78.6251%-106 - C2 -3PUV - MALK_ECOLI -
15 PsiBlast_PDB 78.5351%-105 - C2 -3PUW - MALK_ECOLI -
23 PsiBlast_CBE 78.3251%-107 - C2 -3PUZ - MALK_ECOLI -
32 PsiBlast_CBE 78.0751%-107 - C2 -2R6G - MALK_ECOLI (first) -
12 PsiBlast_PDB 77.8851%-107 - C2 -3PUZ - MALK_ECOLI -
33 PsiBlast_CBE 77.6251%-102 - C2 -2R6G - MALK_ECOLI (first) -
48 PsiBlast_CBE 63.3437%-116 - C2 -3FVQ 7.5 FBPC_NEIG1
49 PsiBlast_CBE 63.1437%-113 - C2 -3FVQ 7.0 FBPC_NEIG1
58 PsiBlast_CBE 58.0933%-104 - C2 -4U00 6.1 ?
71 PsiBlast_CBE 57.1135%-100 - C2 -2OLK 4.8 ?
81 PsiBlast_CBE 56.6233%-102 - C2 -1L2T 6.8 Y796_METJA
111 HHSearch 56.5732%-100 - C2 -2OLJ 6.1 ?
117 HHSearch 56.5031% -98 - C2 -1B0U 5.8 HISP_SALTY
75 PsiBlast_CBE 56.3936% -96 - C2 -4YMV 4.8 ?
74 PsiBlast_CBE 56.0835%-104 - C2 -2OLJ 4.9 ?
62 PsiBlast_CBE 56.0135%-101 - C2 -3C4J 5.7 ?
61 PsiBlast_CBE 55.9835%-103 - C2 -3C4J 4.5 ?
84 PsiBlast_CBE 55.9633%-102 - C2 -3TIF 6.1 Y796_METJA
76 PsiBlast_CBE 55.8636% -96 - C2 -4YMV 3.6 ?
69 PsiBlast_CBE 55.6635% -98 - C2 -2OLK 5.1 ?
59 PsiBlast_CBE 55.5935%-103 - C2 -3C41 4.4 ?
77 PsiBlast_CBE 55.4136% -97 - C2 -4YMU 5.0 ?
78 PsiBlast_CBE 55.3836% -98 - C2 -4YMU 4.4 ?
83 PsiBlast_CBE 55.3433%-105 - C2 -3TIF 6.4 Y796_METJA
70 PsiBlast_CBE 55.2735%-100 - C2 -2OLK 5.2 ?
82 PsiBlast_CBE 55.2333%-102 - C2 -1L2T 6.7 Y796_METJA
72 PsiBlast_CBE 55.0435%-100 - C2 -2OLK 4.8 ?
60 PsiBlast_CBE 54.5635% -96 - C2 -3C41 6.0 ?
63 PsiBlast_CBE 54.0435%-101 - C2 -2Q0H 5.0 ?
73 PsiBlast_CBE 53.7135% -94 - C2 -2OLJ 5.4 ?
64 PsiBlast_CBE 53.4235% -96 - C2 -2Q0H 4.5 ?
87 PsiBlast_CBE 45.1632% -79 - C2 -1B0U 3.4 HISP_SALTY