@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0284: (2016-03-14 )
LIELHQVSKSFNVNGKTVEAVKNVSITVEKGEIFGVVGYSGAGKSTLVRCINLLERPDAGQVVIDGKNLSTLSSKELRVARRKIGMIFQGYNLLKTATVYDNIAKPLKLEGVPKNEIETRVNKYLSIVGLEDKRNNYPSQLSGGQKQRVAIARALAHEPEILLSDEATSALDPETTEAILQLLLKINAELGITIFLITHELDVIQRICDRVAVMENGHLVEQGTVLDIFTKAKHATTKRFVGSEASFDIPQDLLEKYVATGKLVSLHFIGDEADEPALALVSRKFDVLPSILAGGIDHLKNGTLGKLLVHLKGDEVEYSKAISYLKESGVVVEEVELL

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




104 HHSearch 95.2749%-118 - C1 -3TUI - METN_ECOLI -
125 Fugue 95.0449%-123 - C1 -3TUZ - METN_ECOLI -
3 PsiBlast_PDB 95.0148%-116 - C1 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 93.9348%-117 - C1 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 93.9348%-123 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 93.6448%-115 - C1 -3TUZ - METN_ECOLI -
22 PsiBlast_CBE 93.6048%-116 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 93.5948%-117 - C1 -3TUI - METN_ECOLI -
25 PsiBlast_CBE 92.7548%-117 - C1 -3TUI - METN_ECOLI -
24 PsiBlast_CBE 92.6648%-121 - C1 -3TUI - METN_ECOLI -
1 PsiBlast_PDB 89.7749%-109 - C1 -3DHW - METN_ECOLI -
38 PsiBlast_CBE 69.4743%-108 - C1 -4YMU - ? -
15 PsiBlast_PDB 69.1343%-108 - C1 -4YMW - ? -
37 PsiBlast_CBE 68.5143%-109 - C1 -4YMV - ? -
30 PsiBlast_CBE 68.2242%-106 - C1 -2OUK - ? -
11 PsiBlast_PDB 68.1843%-108 - C1 -4YMS - ? -
14 PsiBlast_PDB 68.1343%-106 - C1 -4YMV - ? -
32 PsiBlast_CBE 68.0642%-111 - C1 -2OLK - ? -
7 PsiBlast_PDB 67.9542%-113 - C1 -2OUK - ? -
12 PsiBlast_PDB 67.5943%-109 - C1 -4YMT - ? -
120 HHSearch 66.0143%-113 * C1 *2OLJ 6.0 ?
122 HHSearch 65.3035%-116 - C1 -1B0U 5.8 HISP_SALTY
110 HHSearch 54.8031%-105 - C1 -3FVQ 6.9 FBPC_NEIG1
78 PsiBlast_CBE 44.4839% -95 - C1 -2FFA 5.0
65 PsiBlast_CBE 44.4040% -97 - C1 -2FF7 5.0
67 PsiBlast_CBE 44.3040% -96 - C1 -2PMK 5.1
71 PsiBlast_CBE 42.9939% -91 - C1 -2FGK 6.0 HLYBP_ECOLX
72 PsiBlast_CBE 42.6639% -90 - C1 -2FFB 5.0
80 PsiBlast_CBE 42.5439% -95 - C1 -1XEF 5.3 HLYBP_ECOLX
77 PsiBlast_CBE 42.3939% -91 - C1 -2FGJ 5.5 HLYBP_ECOLX
74 PsiBlast_CBE 42.3039% -97 - C1 -2FGJ 5.6
75 PsiBlast_CBE 42.2939% -93 - C1 -2FGJ 5.5 HLYBP_ECOLX
76 PsiBlast_CBE 42.0839% -96 - C1 -2FGJ 6.0 HLYBP_ECOLX
68 PsiBlast_CBE 42.0839% -92 - C1 -2FGK 5.9
79 PsiBlast_CBE 41.9739% -93 - C1 -1XEF 5.7
82 PsiBlast_CBE 41.9039% -93 - C1 -1XEF 4.7 HLYBP_ECOLX
73 PsiBlast_CBE 41.8839% -96 - C1 -3B5J 5.1
70 PsiBlast_CBE 41.6639% -92 - C1 -2FGK 6.1 HLYBP_ECOLX
69 PsiBlast_CBE 41.6639% -92 - C1 -2FGK 5.4 HLYBP_ECOLX
81 PsiBlast_CBE 40.9039% -93 - C1 -1XEF 5.9 HLYBP_ECOLX