@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0285: (2016-03-14 )
MKKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAGPHQQIAEEVQKLAKKDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDKGYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKLKDGVEEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDAIYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSDEVKAFIEKEFNGSVVPAF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MET_B_15(4IB2)
?
[Raw transfer]



MET_A_3(3K2D)
?
[Raw transfer]



MET_X_2(4YAH)
METQ_ECOLI
[Raw transfer]



MET_B_4(3K2D)
?
[Raw transfer]



MET_A_2(4QHQ)
?
[Raw transfer]



MET_A_7(4IB2)
?
[Raw transfer]



MET_A_3(3TQW)
?
[Raw transfer]



MET_A_3(3TQW)
?
[Raw transfer]



MET_C_3(1P99)
?
[Raw transfer]



MET_C_3(1P99)
?
[Raw transfer]
1 PsiBlast_PDB 96.8450% -57 - C4 -4QHQ 3.6 ?
3 PsiBlast_PDB 96.3846% -58 - C4 -3TQW 3.4 ?
35 HHSearch 96.2747% -58 - C4 -3TQW 3.4 ?
2 PsiBlast_PDB 93.0346% -48 - C4 -4YAH 4.0 METQ_ECOLI
5 PsiBlast_PDB 91.1142% 0 - C- -4K3F - ? -
4 PsiBlast_PDB 90.0840% -53 - C4 -4IB2 3.9 ?
21 PsiBlast_CBE 89.9640% -54 - C4 -4IB2 3.9 ?
34 HHSearch 89.9031% -58 - C4 -1XS5 - TPN32_TREPA -
15 PsiBlast_PDB 89.3230% -56 - C4 -1XS5 - TPN32_TREPA -
53 Fugue 87.8540% -55 * C4 *1P99 - ? -
7 PsiBlast_PDB 87.4243% -57 - C4 -3K2D 3.2 ?
6 PsiBlast_PDB 87.2439% 0 - C- -4OTE - ? -
22 PsiBlast_CBE 85.9043% -58 - C4 -3K2D 3.2 ?
17 PsiBlast_PDB 85.1332% -56 - C4 -4NTL - ? -
12 PsiBlast_PDB 85.0340% -59 - C4 -1P99 3.3 ?
29 PsiBlast_CBE 84.5137% -48 - C4 -3IR1 - ? -
31 PsiBlast_CBE 84.4037% -48 - C4 -3IR1 - ? -
33 HHSearch 84.3439% -57 - C4 -1P99 3.3 ?
8 PsiBlast_PDB 84.2837% -46 - C4 -3GXA - ? -
23 PsiBlast_CBE 84.2637% -47 - C4 -3GXA - ? -