@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0293: (2016-03-14 )
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_2(4FAK)
RLMH_STAAU
[Raw transfer]




2 PsiBlast_PDB 96.6861%-137 - C3 -4FAK 8.0 RLMH_STAAU
3 PsiBlast_PDB 94.6161%-131 - C3 -1VH0 - RLMH_STAAU -
5 PsiBlast_PDB 75.5929%-130 - C3 -1O6D - RLMH_THEMA -
36 HHSearch 74.4230%-126 - C3 -1O6D - RLMH_THEMA -
1 PsiBlast_PDB 64.8173% -44 - C3 -1TO0 - RLMH_BACSU -
34 HHSearch 55.4575% -13 - C3 -1TO0 - RLMH_BACSU -
56 Fugue 52.6820%-101 - C3 -4C6S - WR52C_ARATH -
4 PsiBlast_PDB 49.9433% -11 - C3 -1NS5 - RLMH_ECOLI -
62 Fugue 49.1512%-101 - C3 -1MXI - TRML_HAEIN -
37 HHSearch 46.3514% -94 - C3 -3OII - NEP1_YEAST -
43 HHSearch 45.6727%-126 - C3 -3IEF - TRMD_BARHE -
39 HHSearch 45.3318%-125 * C3 *3KNU - TRMD_ANAPZ -
41 HHSearch 44.7125%-114 - C3 -3KY7 - TRMD_STAAR -
35 HHSearch 42.9733% 11 - C3 -1NS5 - RLMH_ECOLI -
40 HHSearch 42.5824% -99 - C3 -1OY5 - TRMD_AQUAE -
42 HHSearch 41.5919%-116 - C3 -3QUV - ? -
50 HHSearch 40.5111%-121 - C3 -2HA8 - TARB1_HUMAN -
61 Fugue 37.5717% -39 * C2 *4LEU - PP266_ARATH -
52 HHSearch 37.3821% -70 - C3 -3ILK - Y380_HAEIN -
57 Fugue 36.9812% -44 - C3 -2O3A - TRM56_ARCFU -