@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0315: (2016-03-14 )
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PF1_B_4(2QCX)
TENA_BACSU
[Raw transfer]




PF1_A_3(2QCX)
TENA_BACSU
[Raw transfer]




HMH_K_11(1YAK)
TENA_BACSU
[Raw transfer]




HMH_M_13(1YAK)
TENA_BACSU
[Raw transfer]




HMH_O_15(1YAK)
TENA_BACSU
[Raw transfer]




HMH_I_9(1YAK)
TENA_BACSU
[Raw transfer]




HMH_A_5(2GM8)
?
[Raw transfer]




IMD_A_5(3NO6)
TENA_STAES
[Raw transfer]




IMD_A_2(3MVU)
?
[Raw transfer]




HMH_A_3(1TO9)
TENA_BACSU
[Raw transfer]




24 PsiBlast_CBE 96.9734% -99 - C2 -2QCX 4.6 TENA_BACSU
1 PsiBlast_PDB 95.8334% -97 - C2 -1YAF - TENA_BACSU -
23 PsiBlast_CBE 95.3834%-101 - C2 -1YAK 3.2 TENA_BACSU
3 PsiBlast_PDB 95.3634% -99 - C2 -2QCX 4.5 TENA_BACSU
2 PsiBlast_PDB 95.3634%-100 - C2 -1YAK 3.4 TENA_BACSU
21 PsiBlast_CBE 95.0634%-100 - C2 -1YAK 3.4 TENA_BACSU
22 PsiBlast_CBE 94.2534% -99 - C2 -1YAK 3.5 TENA_BACSU
4 PsiBlast_PDB 89.4534% -94 - C2 -1TO9 3.1 TENA_BACSU
26 HHSearch 87.4523%-105 - C2 -3IBX - TENA_HELPX -
31 HHSearch 87.3921% -94 - C2 -3RM5 - THI20_YEAST -
29 HHSearch 87.0723% -97 - C2 -3MVU 4.0 ?
12 PsiBlast_PDB 85.3023% -99 - C2 -3RM5 - THI20_YEAST -
8 PsiBlast_PDB 84.4324%-102 - C2 -3IBX - TENA_HELPX -
10 PsiBlast_PDB 84.1227%-103 - C2 -1UDD - ? -
34 HHSearch 82.9228% -95 - C2 -2GM8 - ? -
28 HHSearch 82.3922%-102 * C2 *1UDD - ? -
9 PsiBlast_PDB 81.8224% -98 - C2 -2RD3 - TENA_HELPX -
25 HHSearch 81.3423% -98 - C2 -3NO6 4.1 TENA_STAES
15 PsiBlast_PDB 80.5323% -92 - C2 -1Z72 - ? -
27 HHSearch 79.2721% -96 - C2 -1RTW - ? -
7 PsiBlast_PDB 74.1530% -90 - C2 -2GM8 3.1 ?