@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0346: (2016-03-14 )
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETLVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG

Atome Classification :

(76 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGH_A_3(3TAO)
TPIS_MYCTU
[Raw transfer]




G3P_A_3(3UWU)
TPIS_STAAR
[Raw transfer]




PGH_B_4(7TIM)
TPIS_YEAST
[Raw transfer]




3PG_A_3(2VFI)
TPIS_PLAFA
[Raw transfer]




PGA_A_2(3PVF)
TPIS_PLAFA
[Raw transfer]




3PG_A_3(2VFH)
TPIS_PLAFA
[Raw transfer]




PGA_A_3(2J27)
TPIS_TRYBB
[Raw transfer]




G2H_A_3(3UWZ)
TPIS_STAAR
[Raw transfer]




G2H_B_5(3UWZ)
TPIS_STAAR
[Raw transfer]




3PG_B_6(3UWW)
TPIS_STAAR
[Raw transfer]




PGA_A_2(4BI6)
TPI1_GIAIN
[Raw transfer]




3PG_C_3(1M7O)
TPIS_PLAFA
[Raw transfer]




G3P_B_5(3UWU)
TPIS_STAAR
[Raw transfer]




3PG_B_5(2VFI)
TPIS_PLAFA
[Raw transfer]




3PG_D_4(1M7O)
TPIS_PLAFA
[Raw transfer]




PGA_A_3(2YPI)
TPIS_YEAST
[Raw transfer]




PGA_A_3(4FF7)
TPIS_YEAST
[Raw transfer]




PGA_A_2(1LYX)
TPIS_PLAFA
[Raw transfer]




PGH_B_4(3YPI)
TPIS_YEAST
[Raw transfer]




PGH_A_3(7TIM)
TPIS_YEAST
[Raw transfer]




G3H_C_3(1M7P)
TPIS_PLAFA
[Raw transfer]




3PG_A_4(3UWW)
TPIS_STAAR
[Raw transfer]




PEG_B_9(4MVA)
?
[Raw transfer]




3PY_A_4(1O5X)
TPIS_PLAFA
[Raw transfer]




G3H_D_4(1M7P)
TPIS_PLAFA
[Raw transfer]




UVW_A_4(4MVA)
?
[Raw transfer]




G2H_F_6(1WOA)
TPIS_PLAFA
[Raw transfer]




GOL_A_4(2VFE)
TPIS_PLAFA
[Raw transfer]




PGA_B_4(2YPI)
TPIS_YEAST
[Raw transfer]




G2H_H_8(1WOA)
TPIS_PLAFA
[Raw transfer]




GOL_B_6(2VFE)
TPIS_PLAFA
[Raw transfer]




G2H_G_7(1WOA)
TPIS_PLAFA
[Raw transfer]




PGA_E_5(1LZO)
TPIS_PLAFA
[Raw transfer]




PGA_F_6(1LZO)
TPIS_PLAFA
[Raw transfer]




GOL_A_3(3GVG)
TPIS_MYCTU
[Raw transfer]




G2H_E_5(1WOA)
TPIS_PLAFA
[Raw transfer]




3PG_B_4(2VFH)
TPIS_PLAFA
[Raw transfer]




3PY_A_4(1O5X)
TPIS_PLAFA
[Raw transfer]




EDO_A_6(5BMW)
?
[Raw transfer]




EDO_A_3(3PWA)
TPIS_PLAFA
[Raw transfer]




EDO_A_5(5BMX)
?
[Raw transfer]




EDO_D_18(5BMX)
?
[Raw transfer]




EDO_B_5(5BNK)
?
[Raw transfer]




EDO_A_4(4ZZ9)
?
[Raw transfer]




EDO_B_7(4ZZ9)
?
[Raw transfer]




EDO_C_14(5BMX)
?
[Raw transfer]




EDO_B_11(5BMX)
?
[Raw transfer]




EDO_B_12(5BMW)
?
[Raw transfer]




EDO_A_4(3PY2)
TPIS_PLAFA
[Raw transfer]




EDO_A_4(3PSV)
TPIS_PLAFA
[Raw transfer]




EDO_A_3(3PSW)
TPIS_PLAFA
[Raw transfer]




GOL_B_5(3GVG)
TPIS_MYCTU
[Raw transfer]




2PG_B_7(3UWV)
TPIS_STAAR
[Raw transfer]




2PG_A_5(3UWV)
TPIS_STAAR
[Raw transfer]




2PG_B_5(1O5X)
TPIS_PLAFA
[Raw transfer]




EDO_B_7(3PSW)
TPIS_PLAFA
[Raw transfer]




CIT_B_5(3M9Y)
TPIS_STAAR
[Raw transfer]




TRS_H_8(2I9E)
?
[Raw transfer]




GOL_B_18(4FF7)
TPIS_YEAST
[Raw transfer]




MRD_A_2(4MKN)
?
[Raw transfer]




73 PsiBlast_CBE 94.8432% -92 * C7 *4IOT - TPIS_ECODH -
75 PsiBlast_CBE 94.5732% -91 - C7 -4MVA 3.8 ?
57 PsiBlast_CBE 94.4433% -88 - C7 -1TMH - TPIS_ECOLI -
76 PsiBlast_CBE 94.0932% -91 - C7 -4K6A - ? -
60 PsiBlast_CBE 93.8133% -88 - C7 -1TMH - TPIS_ECOLI -
58 PsiBlast_CBE 93.1233% -88 - C7 -1TMH - TPIS_ECOLI -
74 PsiBlast_CBE 93.0132% -91 - C7 -4MVA 1.9 ?
59 PsiBlast_CBE 92.3133% -87 - C7 -1TMH - TPIS_ECOLI -
56 PsiBlast_CBE 91.7331%-100 - C7 -4Y8F - ? -
101 Fugue 90.4434% -97 - C7 -1YDV - TPIS_PLAFA -
117 HHSearch 89.8434% -93 - C7 -1O5X 3.2 TPIS_PLAFA
120 HHSearch 89.7630% -95 - C7 -3TA6 - TPIS_MYCTU -
71 PsiBlast_CBE 89.6831% -88 - C7 -4Y96 - ? -
54 PsiBlast_CBE 89.5932% -82 - C7 -1YYA - TPIS_THET8 -
111 HHSearch 89.5532% -84 - C7 -1YYA - TPIS_THET8 -
122 HHSearch 89.4528%-102 - C7 -3KRS - ? -
55 PsiBlast_CBE 89.2732% -81 - C7 -1YYA - TPIS_THET8 -
112 HHSearch 89.1930% -95 - C7 -1AW2 - TPIS_MORMI -
72 PsiBlast_CBE 89.0631% -87 - C7 -4Y96 - ? -
113 HHSearch 88.1028% -99 - C7 -1B9B - PGKT_THEMA -
97 PsiBlast_CBE 87.5131% -90 - C7 -3GVG 3.2 TPIS_MYCTU
96 PsiBlast_CBE 86.7131% -87 - C7 -3GVG 2.9 TPIS_MYCTU
100 PsiBlast_CBE 85.2632% -82 - C7 -4BI6 2.6 TPI1_GIAIN
92 PsiBlast_CBE 85.2031% -86 - C7 -3TAO 3.5 TPIS_MYCTU
64 PsiBlast_CBE 83.3932% -85 - C7 -3UWW 3.9 TPIS_STAAR
63 PsiBlast_CBE 83.3832% -83 - C7 -3UWW 3.3 TPIS_STAAR
61 PsiBlast_CBE 83.3132% -84 - C7 -3UWZ 3.1 TPIS_STAAR
9 PsiBlast_PDB 83.0935% -96 - C7 -1LYX 3.1 TPIS_PLAFA
69 PsiBlast_CBE 82.6832% -82 - C7 -3M9Y 3.5 TPIS_STAAR
11 PsiBlast_PDB 82.5435% -97 - C7 -1O5X 2.4 TPIS_PLAFA
67 PsiBlast_CBE 82.5232% -81 - C7 -3UWU 3.2 TPIS_STAAR
83 PsiBlast_CBE 82.3432% -91 - C7 -4FF7 2.1 TPIS_YEAST
84 PsiBlast_CBE 82.3232% -90 - C7 -4FF7 2.4 TPIS_YEAST
65 PsiBlast_CBE 82.2632% -81 - C7 -3UWV 2.9 TPIS_STAAR
68 PsiBlast_CBE 82.2132% -80 - C7 -3UWU 4.0 TPIS_STAAR
5 PsiBlast_PDB 82.1635% -96 - C7 -2VFH 2.9 TPIS_PLAFA
62 PsiBlast_CBE 82.1432% -82 - C7 -3UWZ 2.2 TPIS_STAAR
50 PsiBlast_CBE 81.9435%-100 - C7 -3PWA 2.4 TPIS_PLAFA
39 PsiBlast_CBE 81.9235%-100 - C7 -5BMX 2.5 ?
19 PsiBlast_PDB 81.8635% -99 - C7 -5BMX 2.4 ?
8 PsiBlast_PDB 81.8535% -98 - C7 -1M7P 3.0 TPIS_PLAFA
27 PsiBlast_CBE 81.8435% -95 - C7 -2VFI 2.3 TPIS_PLAFA
66 PsiBlast_CBE 81.7732% -80 - C7 -3UWV 2.4 TPIS_STAAR
26 PsiBlast_CBE 81.7335% -96 - C7 -2VFH 3.2 TPIS_PLAFA
81 PsiBlast_CBE 81.6132% -96 - C7 -3YPI 2.5 TPIS_YEAST
29 PsiBlast_CBE 81.6035% -98 - C7 -1M7P 3.1 TPIS_PLAFA
14 PsiBlast_PDB 81.3135%-106 - C7 -3PSV 2.7 TPIS_PLAFA
35 PsiBlast_CBE 81.2335%-103 - C7 -5BNK 2.3 ?
34 PsiBlast_CBE 81.2335% -98 - C7 -4ZZ9 2.4 ?
13 PsiBlast_PDB 81.1635% -99 - C7 -3PSW 2.5 TPIS_PLAFA
77 PsiBlast_CBE 81.1333% -92 - C7 -7TIM 4.0 TPIS_YEAST
37 PsiBlast_CBE 81.1335% -98 - C7 -5BMW 2.2 ?
78 PsiBlast_CBE 80.9733% -90 - C7 -7TIM 4.0 TPIS_YEAST
18 PsiBlast_PDB 80.9335% -99 - C7 -5BMW 2.5 ?
15 PsiBlast_PDB 80.9035%-104 - C7 -4ZZ9 2.5 ?
30 PsiBlast_CBE 80.7335% -97 - C7 -1M7O 3.5 TPIS_PLAFA
12 PsiBlast_PDB 80.7235% -94 - C7 -2VFI 3.1 TPIS_PLAFA
52 PsiBlast_CBE 80.6835%-100 - C7 -3PY2 2.3 TPIS_PLAFA
47 PsiBlast_CBE 80.6835% -97 - C7 -1WOA 2.5 TPIS_PLAFA
46 PsiBlast_CBE 80.6235% -95 - C7 -1WOA 3.6 TPIS_PLAFA
7 PsiBlast_PDB 80.6035% -99 - C7 -1M7O 3.5 TPIS_PLAFA
48 PsiBlast_CBE 80.5535% -96 - C7 -1WOA 2.4 TPIS_PLAFA
40 PsiBlast_CBE 80.4735% -97 - C7 -5BMX 2.4 ?
32 PsiBlast_CBE 80.3735%-100 - C7 -1LZO 3.3 TPIS_PLAFA
80 PsiBlast_CBE 80.1633% -88 - C7 -2YPI 3.0 TPIS_YEAST
38 PsiBlast_CBE 80.0335%-107 - C7 -5BMX 2.5 ?
31 PsiBlast_CBE 79.9435% -98 - C7 -1LZO 3.2 TPIS_PLAFA
2 PsiBlast_PDB 79.9135% -96 - C7 -2VFE 2.6 TPIS_PLAFA
53 PsiBlast_CBE 79.8135% -90 - C7 -3PVF 3.3 TPIS_PLAFA
45 PsiBlast_CBE 79.4835% -96 - C7 -1WOA 2.6 TPIS_PLAFA
21 PsiBlast_CBE 78.7535% -99 - C7 -2VFE 2.2 TPIS_PLAFA
28 PsiBlast_CBE 78.3635% -93 - C7 -1O5X 2.8 TPIS_PLAFA
33 PsiBlast_CBE 78.3135% -96 - C7 -3PSW 2.0 TPIS_PLAFA
79 PsiBlast_CBE 78.1833% -87 - C7 -2YPI 2.7 TPIS_YEAST
95 PsiBlast_CBE 77.7932% -86 - C7 -4MKN 3.2 ?
88 PsiBlast_CBE 69.1534% -82 - C7 -2I9E 2.5 ?