@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0367: (2016-03-14 )
MTDKKSENQTEKTETKENKGMTRREMLKLSAVAGTGIAVGATGLGTILNVVDQVDKALTPKEKAETGVPFYASNQAGIITAQQTYCYIASFDIQTESRQILQDLFVKWTKFADLTTSGGVLRDVDNDMLPPNDTGEADGLGISNFTVTLGYGPTFFEKDGKDRFGVKAKKPKYLEKIPHMAHDSLDEAYSDGDLCIQVCADDQQVAFHGIRNFIRLASGVAVVRWIEEGFLSAPKNETPRNLFGFKDGTANVDHDSNKGYKDVVWAEKDEPEWMRNGSYLGYRKIQMLIEIWDRSSLLDQEDTFGRKKASGAPYHKKHEHDKVDPSKLPADSHVRLAKDTKQQMHRRAYSYTNGIDKSTGTIDAGLLFICFTQNPAKQFLPMLSIMGKMDKLNEYTVPIGSAMFACQGGLAPGEIFGEKLL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PP9_A_3(2Y4E)
EFEB_ECOLI
[Raw transfer]




HEM_A_3(2Y4F)
EFEB_ECOLI
[Raw transfer]




HEM_B_12(2Y4F)
EFEB_ECOLI
[Raw transfer]




PP9_B_7(2Y4E)
EFEB_ECOLI
[Raw transfer]




HEM_A_3(4GS1)
?
[Raw transfer]




HEM_B_6(4GS1)
?
[Raw transfer]




PG4_B_23(2Y4D)
EFEB_ECOLI
[Raw transfer]




PG4_A_10(2Y4D)
EFEB_ECOLI
[Raw transfer]




PEO_A_4(4GRC)
?
[Raw transfer]




2 PsiBlast_PDB 98.7838% -64 - C2 -2Y4F 11.7 EFEB_ECOLI
28 HHSearch 98.6939% -63 - C2 -3O72 - EFEB_ECO57 -
4 PsiBlast_PDB 98.2438% -64 - C2 -2Y4E 11.3 EFEB_ECOLI
21 PsiBlast_CBE 98.2238% -62 - C2 -2Y4F 11.9 EFEB_ECOLI
22 PsiBlast_CBE 98.0038% -67 - C2 -2Y4E 10.9 EFEB_ECOLI
3 PsiBlast_PDB 97.8038% -65 - C2 -2Y4D 2.2 EFEB_ECOLI
23 PsiBlast_CBE 97.5538% -65 - C2 -2Y4D 2.7 EFEB_ECOLI
5 PsiBlast_PDB 97.3237% -63 - C2 -3O72 - EFEB_ECO57 -
24 PsiBlast_CBE 92.3734% -69 - C2 -4GT2 - ? -
26 PsiBlast_CBE 92.1934% -63 - C2 -4GT2 - ? -
6 PsiBlast_PDB 91.6234% -68 - C2 -4GT2 - ? -
25 PsiBlast_CBE 91.5534% -66 - C2 -4GT2 - ? -
1 PsiBlast_PDB 89.6542% -62 - C2 -4GRC 3.2 ?
7 PsiBlast_PDB 74.3634% -45 - C2 -4GS1 7.9 ?
27 PsiBlast_CBE 74.0634% -44 - C2 -4GS1 9.1 ?
44 Fugue 70.4520% -34 - C2 -3QNS - ? -
30 HHSearch 68.0620% -59 - C2 -3QNS - ? -
29 HHSearch 67.5221% -58 - C2 -2IIZ - ? -
31 HHSearch 65.4918% -58 - C2 -2GVK - ? -
32 HHSearch 63.0116% -47 - C2 -3VXJ - ? -