@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0372: (2016-03-15 )
MKELLTFPKDFWWGSAWSAEQAEGRGDTGKAKTVWEHWFETEPNRFYEGVGSEITTDHFNRYKEDVQWMKKTGQNSFRISISWARMFPDDGVGEVNQKAIAFYRDLLTEMNENGVKPFANLYHFDMPVALQDAGGWESREVVDAYVHFADTCFKEFGDLVYHWFTFNEPLGPILGGYLEGFHYPNQIDFKRGTQAGFNTILAHTLAIKAFKKINLSSKIGVILNLSPTYPRSQNEYDLEAAEICDAFYTRSFLDPMVKGTFPEKLVEIMREYDQMPEYTEEDLTIIKENTAQILGLNYYEPRRVKARLTAINEKSPFLPDWFFEPHNMPGKRMNIYRGWEIYERGIYDLCIDIRDNYGNIESFISENGMGVANEERFLNEEGQIQDDYRIQFVKDHLAYVHQAIAEGCDIKGYHLWTFIDCWSWINAYKNRYGLVSLDVETGKRTMKKSGEFYKKMSDMNGFEYETSKLVGTKREETTNG

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_2(4HZ8)
?
[Raw transfer]




GOX_A_7(2J78)
BGLA_THEMA
[Raw transfer]




GIM_A_4(2CES)
BGLA_THEMA
[Raw transfer]




GIM_B_7(2CES)
BGLA_THEMA
[Raw transfer]




NTZ_B_5(2J7B)
BGLA_THEMA
[Raw transfer]




GOX_B_9(2J78)
BGLA_THEMA
[Raw transfer]




NOY_B_6(2J75)
BGLA_THEMA
[Raw transfer]




TCB_A_3(4PTV)
?
[Raw transfer]




IFL_B_4(1UZ1)
BGLA_THEMA
[Raw transfer]




GTL_A_3(2J79)
BGLA_THEMA
[Raw transfer]




TCB_B_6(4PTV)
?
[Raw transfer]




IFL_A_3(1UZ1)
BGLA_THEMA
[Raw transfer]




NOJ_A_3(1OIM)
BGLA_THEMA
[Raw transfer]




NOY_A_4(2J75)
BGLA_THEMA
[Raw transfer]




BGC_A_2(4HZ7)
?
[Raw transfer]




GTL_B_5(2J79)
BGLA_THEMA
[Raw transfer]




BGC_A_2(3WH6)
?
[Raw transfer]




CTS_B_6(2CBU)
BGLA_THEMA
[Raw transfer]




CGB_B_5(2CBV)
BGLA_THEMA
[Raw transfer]




OXZ_A_3(1W3J)
BGLA_THEMA
[Raw transfer]




CGB_A_3(2CBV)
BGLA_THEMA
[Raw transfer]




IFM_A_3(1OIF)
BGLA_THEMA
[Raw transfer]




BGC_B_5(4PTX)
?
[Raw transfer]




CTS_A_3(2CBU)
BGLA_THEMA
[Raw transfer]




AZF_B_7(2J7H)
BGLA_THEMA
[Raw transfer]




NOJ_B_5(2J77)
BGLA_THEMA
[Raw transfer]




OXZ_B_4(1W3J)
BGLA_THEMA
[Raw transfer]




BGC_A_3(4PTX)
?
[Raw transfer]




NOJ_B_4(1OIM)
BGLA_THEMA
[Raw transfer]




GOL_B_9(2RGL)
BGL07_ORYSJ
[Raw transfer]




GOL_S_19(2DGA)
HGL1B_WHEAT
[Raw transfer]




SRT_A_24(3CMJ)
?
[Raw transfer]




IFM_B_4(1OIF)
BGLA_THEMA
[Raw transfer]




GOL_A_8(2RGL)
BGL07_ORYSJ
[Raw transfer]




YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]




GOL_A_3(3WH5)
?
[Raw transfer]




FCB_A_2(3WH7)
?
[Raw transfer]




GOL_A_2(4HZ6)
?
[Raw transfer]




IFM_A_3(3WH8)
?
[Raw transfer]




G2F_B_5(4PTW)
?
[Raw transfer]




TRS_A_2(3W53)
?
[Raw transfer]




G2F_A_9(1E4I)
BGLA_PAEPO
[Raw transfer]




G2F_A_3(4PTW)
?
[Raw transfer]




G2F_A_3(1OIN)
BGLA_THEMA
[Raw transfer]




G2F_A_9(1UYQ)
BGLA_PAEPO
[Raw transfer]




G2F_B_4(1OIN)
BGLA_THEMA
[Raw transfer]




2 PsiBlast_PDB 95.9244% -72 - C6 -4B3L - ? -
1 PsiBlast_PDB 95.0744% -74 - C6 -4B3K - ? -
21 PsiBlast_CBE 92.4439% -73 - C6 -3AHX - ? -
23 PsiBlast_CBE 91.9539% -74 - C6 -3AHX - ? -
22 PsiBlast_CBE 91.5739% -72 - C6 -3AHX - ? -
3 PsiBlast_PDB 91.5139% -72 - C6 -3AHX - ? -
6 PsiBlast_PDB 88.4334% -73 - C6 -1TR1 - BGLA_PAEPO -
29 PsiBlast_CBE 88.3734% -74 - C6 -1BGG - BGLA_PAEPO -
28 PsiBlast_CBE 88.2934% -73 - C6 -1BGG - BGLA_PAEPO -
24 PsiBlast_CBE 88.2334% -73 - C6 -1TR1 - BGLA_PAEPO -
4 PsiBlast_PDB 88.0834% -72 - C6 -1E4I 2.2 BGLA_PAEPO
27 PsiBlast_CBE 88.0334% -73 - C6 -1BGG - BGLA_PAEPO -
25 PsiBlast_CBE 87.9434% -73 - C6 -1TR1 - BGLA_PAEPO -
5 PsiBlast_PDB 87.7934% -73 - C6 -1UYQ 2.5 BGLA_PAEPO
26 PsiBlast_CBE 87.7534% -73 - C6 -1TR1 - BGLA_PAEPO -
8 PsiBlast_PDB 87.7134% -72 - C6 -1BGA - BGLA_PAEPO -
7 PsiBlast_PDB 87.6734% -73 - C6 -1BGG - BGLA_PAEPO -
81 PsiBlast_CBE 87.5032% -75 - C6 -1GON - ? -
83 PsiBlast_CBE 87.4932% -75 - C6 -1GNX - ? -
72 PsiBlast_CBE 86.9734% -64 - C6 -3W53 2.9 ?
80 PsiBlast_CBE 85.2833% -72 - C6 -3WH5 2.6 ?
31 PsiBlast_CBE 85.1534% -71 - C6 -4PTW 2.7 ?
79 PsiBlast_CBE 84.8633% -70 - C6 -3WH6 4.0 ?
78 PsiBlast_CBE 84.6933% -68 - C6 -3WH7 3.3 ?
73 PsiBlast_CBE 84.6032% -70 - C6 -3CMJ 3.3 ?
19 PsiBlast_PDB 84.5735% -63 - C6 -2CBV 3.9 BGLA_THEMA
14 PsiBlast_PDB 84.2235% -64 - C6 -1OIM 4.0 BGLA_THEMA
32 PsiBlast_CBE 84.1434% -70 - C6 -4PTV 4.0 ?
9 PsiBlast_PDB 84.0434% -72 - C6 -4PTV 4.0 ?
75 PsiBlast_CBE 83.9932% -70 - C6 -4HZ7 3.7 ?
11 PsiBlast_PDB 83.9734% -70 - C6 -4PTX 3.6 ?
59 PsiBlast_CBE 83.8135% -63 - C6 -2J78 4.3 BGLA_THEMA
76 PsiBlast_CBE 83.7632% -70 - C6 -4HZ6 2.5 ?
30 PsiBlast_CBE 83.5734% -69 - C6 -4PTX 3.4 ?
17 PsiBlast_PDB 83.4635% -62 - C6 -1UZ1 3.8 BGLA_THEMA
15 PsiBlast_PDB 83.4635% -63 - C6 -1OIN 2.8 BGLA_THEMA
74 PsiBlast_CBE 83.4532% -70 - C6 -4HZ8 3.8 ?
65 PsiBlast_CBE 83.4235% -62 - C6 -2CBV 4.1 BGLA_THEMA
13 PsiBlast_PDB 83.4035% -62 - C6 -1OIF 3.6 BGLA_THEMA
49 PsiBlast_CBE 83.3835% -64 - C6 -2J7H 3.6 BGLA_THEMA
16 PsiBlast_PDB 83.1635% -61 - C6 -1W3J 3.7 BGLA_THEMA
77 PsiBlast_CBE 83.1433% -70 - C6 -3WH8 3.5 ?
61 PsiBlast_CBE 83.0435% -64 - C6 -2J75 4.1 BGLA_THEMA
10 PsiBlast_PDB 83.0234% -69 - C6 -4PTW 2.6 ?
60 PsiBlast_CBE 82.8435% -65 - C6 -2J77 4.0 BGLA_THEMA
69 PsiBlast_CBE 82.7635% -64 - C6 -1OIN 3.9 BGLA_THEMA
111 HHSearch 82.7132% -59 - C6 -2DGA 2.9 HGL1B_WHEAT
20 PsiBlast_PDB 82.6035% -63 - C6 -2CES 4.7 BGLA_THEMA
86 PsiBlast_CBE 82.5831% -66 - C6 -2RGL 2.7 BGL07_ORYSJ
55 PsiBlast_CBE 82.5335% -62 - C6 -2J7B 4.2 BGLA_THEMA
58 PsiBlast_CBE 82.2535% -62 - C6 -2J78 4.3 BGLA_THEMA
87 PsiBlast_CBE 82.1231% -66 - C6 -2RGL 2.7 BGL07_ORYSJ
62 PsiBlast_CBE 82.1035% -63 - C6 -2J75 4.3 BGLA_THEMA
57 PsiBlast_CBE 82.0635% -62 - C6 -2J79 3.8 BGLA_THEMA
18 PsiBlast_PDB 82.0335% -64 - C6 -2CBU 4.6 BGLA_THEMA
71 PsiBlast_CBE 81.8235% -64 - C6 -1OIF 3.4 BGLA_THEMA
56 PsiBlast_CBE 81.5735% -64 - C6 -2J79 3.7 BGLA_THEMA
48 PsiBlast_CBE 81.4835% -62 - C6 -2JAL 3.5 BGLA_THEMA
70 PsiBlast_CBE 81.4735% -64 - C6 -1OIM 4.1 BGLA_THEMA
66 PsiBlast_CBE 80.5435% -64 - C6 -2CBU 4.6 BGLA_THEMA
64 PsiBlast_CBE 80.2235% -65 - C6 -2CES 4.2 BGLA_THEMA
68 PsiBlast_CBE 80.1235% -65 - C6 -1UZ1 3.8 BGLA_THEMA
67 PsiBlast_CBE 79.9635% -63 - C6 -1W3J 3.4 BGLA_THEMA