@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0482: (2016-03-16 )
MEKSSIYGLTWTNLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_5(4PL1)
?
[Raw transfer]




SAM_B_3(4PL1)
?
[Raw transfer]




SF4_A_4(4PL2)
?
[Raw transfer]




SF4_B_3(4PL2)
?
[Raw transfer]




SF4_A_3(3RF9)
RLMN_ECOLI
[Raw transfer]




SF4_B_4(3RF9)
RLMN_ECOLI
[Raw transfer]




2 PsiBlast_PDB 96.0634%-107 - C3 -4PL2 3.4 ?
12 PsiBlast_CBE 95.7934%-104 - C3 -4PL2 3.3 ?
1 PsiBlast_PDB 95.5034%-109 - C3 -3RF9 3.5 RLMN_ECOLI
4 PsiBlast_PDB 95.3934% -96 - C3 -4PL1 7.0 ?
13 PsiBlast_CBE 95.0734%-110 - C3 -4PL1 7.0 ?
11 PsiBlast_CBE 95.0634%-108 - C3 -3RF9 3.5 RLMN_ECOLI
28 Fugue 94.7334%-111 - C3 -3RFA 6.5 RLMN_ECOLI
14 HHSearch 94.6935%-106 - C3 -3RFA 6.5 RLMN_ECOLI
3 PsiBlast_PDB 94.3234%-107 - C3 -3RFA 6.5 RLMN_ECOLI
29 Fugue 59.0518%-100 - C3 -3C8F - PFLA_ECOLI -
17 HHSearch 52.0117% -95 - C3 -2Z2U - TYW1_METJA -
16 HHSearch 50.4819% -74 - C3 -2YX0 - TYW1_PYRHO -
5 PsiBlast_PDB 50.2218% -97 - C3 -3C8F - PFLA_ECOLI -
6 PsiBlast_PDB 49.5818% -95 - C3 -3CB8 - PFLA_ECOLI -
18 HHSearch 49.1318%-108 - C3 -1TV8 - MOAA_STAA8 -
21 HHSearch 48.3217%-105 - C3 -3T7V - PYLB_METBF -
31 Fugue 47.8818% -58 - C3 -2YX0 - TYW1_PYRHO -
22 HHSearch 46.3613%-101 - C3 -1R30 - BIOB_ECOLI -
15 HHSearch 40.0816% -59 - C3 -2A5H - KAMA_CLOSU -
23 HHSearch 38.8813%-100 - C3 -1OLT - HEMN_ECOLI -