@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0498: (2016-03-16 )
MEIAIAADHGGFQLKEKIRAHLIESGYTVKDFGCYSLESVDFPEYAAKVGHFVATENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNVLCLGERVLGDSLALLLLDTWLVAEFEGGRHNTRLQKLAELEEREEDK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_A_3(3HEE)
?
[Raw transfer]




R5P_B_4(3HEE)
?
[Raw transfer]




R52_B_6(3K7S)
?
[Raw transfer]




R52_C_7(3K7S)
?
[Raw transfer]




RES_B_4(3K8C)
?
[Raw transfer]




R52_D_8(3K7S)
?
[Raw transfer]




R52_A_5(3K7S)
?
[Raw transfer]




RB5_A_3(3PH3)
?
[Raw transfer]




RB5_B_4(3PH3)
?
[Raw transfer]




RES_A_3(3K8C)
?
[Raw transfer]




AOS_B_4(3PH4)
?
[Raw transfer]




GOL_B_4(3HE8)
?
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




24 PsiBlast_CBE 97.5550%-138 - C11 -3HE8 2.2 ?
1 PsiBlast_PDB 97.2950%-139 - C11 -3PH4 - ? -
78 HHSearch 96.9550%-135 * C11 *3HE8 1.7 ?
80 HHSearch 96.6850%-137 - C11 -3PH3 2.4 ?
3 PsiBlast_PDB 96.4450%-137 - C11 -3HE8 1.7 ?
22 PsiBlast_CBE 96.4050%-136 - C11 -3PH3 1.9 ?
21 PsiBlast_CBE 96.0850%-136 - C11 -3PH4 1.6 ?
2 PsiBlast_PDB 96.0550%-139 - C11 -3PH3 - ? -
4 PsiBlast_PDB 95.9450%-134 - C11 -3HEE 3.1 ?
5 PsiBlast_PDB 95.3948%-131 - C11 -1NN4 - RPIB_ECOLI -
23 PsiBlast_CBE 95.3850%-135 - C11 -3HEE 2.8 ?
77 HHSearch 94.2347%-131 - C11 -2VVR - RPIB_ECOLI -
6 PsiBlast_PDB 93.5247%-131 - C11 -2VVR - RPIB_ECOLI -
8 PsiBlast_PDB 89.5143%-131 - C11 -4EM8 - ? -
30 PsiBlast_CBE 88.2440%-124 - C11 -3M1P - ? -
9 PsiBlast_PDB 88.1540%-125 - C11 -3K7O - ? -
11 PsiBlast_PDB 87.9440%-124 - C11 -3K8C 3.2 ?
26 PsiBlast_CBE 87.8940%-129 - C11 -3K8C 3.0 ?
10 PsiBlast_PDB 87.7640%-123 - C11 -3K7S 3.0 ?
29 PsiBlast_CBE 87.6640%-125 - C11 -3K7S 3.0 ?
28 PsiBlast_CBE 87.6440%-123 - C11 -3K7S 2.9 ?
27 PsiBlast_CBE 87.2540%-124 - C11 -3K7S 3.0 ?