@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0521: (2016-03-16 )
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G6P_X_2(1U8X)
GLVA_BACSU
[Raw transfer]




25 PsiBlast_CBE 86.1036% -81 - C2 -1UP7 - BGLT_THEMA -
26 PsiBlast_CBE 85.7836% -80 - C2 -1UP7 - BGLT_THEMA -
22 PsiBlast_CBE 85.4436% -80 - C2 -1UP7 - BGLT_THEMA -
21 PsiBlast_CBE 85.0736% -83 - C2 -1UP7 - BGLT_THEMA -
24 PsiBlast_CBE 84.9136% -84 - C2 -1UP7 - BGLT_THEMA -
23 PsiBlast_CBE 84.7536% -81 - C2 -1UP7 - BGLT_THEMA -
3 PsiBlast_PDB 84.0236% -83 - C2 -1UP6 - BGLT_THEMA -
27 HHSearch 83.9737% -78 - C2 -1UP7 - BGLT_THEMA -
28 HHSearch 81.4130% -67 - C2 -1U8X 3.7 GLVA_BACSU
6 PsiBlast_PDB 73.8023% -66 - C2 -1VJT - ? -
4 PsiBlast_PDB 71.8226% -55 - C2 -3FEF - LPLD_BACSU -
2 PsiBlast_PDB 71.0536% -29 - C2 -1UP4 - BGLT_THEMA -
32 HHSearch 70.6323% -70 - C2 -3U95 - ? -
30 HHSearch 70.1666% 4 - C2 -1S6Y - ? -
1 PsiBlast_PDB 69.9265% 5 - C2 -1S6Y - ? -
31 HHSearch 68.0722% -63 - C2 -3FEF - LPLD_BACSU -
5 PsiBlast_PDB 67.5725% -85 - C2 -3U95 - ? -
34 HHSearch 64.1420% -87 - C2 -3P7M - ? -
38 HHSearch 63.5419% -75 - C2 -1PZG - ? -
40 HHSearch 59.0118% -70 - C2 -3TL2 - MDH_BACAN -