@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0554: (2016-03-16 )
MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQDKKVLILYGGGSVERFGTLDKVKAALKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHGLTNISERGDQTLEVSRQIYTNAL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_5(1VLJ)
?
[Raw transfer]




NAP_A_5(1VLJ)
?
[Raw transfer]




NAP_B_6(1VLJ)
?
[Raw transfer]




22 PsiBlast_CBE 99.7956%-101 - C5 -1OJ7 - YQHD_ECOLI -
21 PsiBlast_CBE 98.8056% -91 - C5 -1OJ7 - YQHD_ECOLI -
1 PsiBlast_PDB 98.6056% -91 - C5 -1OJ7 - YQHD_ECOLI -
23 PsiBlast_CBE 98.4656% -89 - C5 -1OJ7 - YQHD_ECOLI -
51 Fugue 96.5254% -83 - C5 -1OJ7 - YQHD_ECOLI -
32 HHSearch 87.2436% -79 - C5 -1VLJ 11.0 ?
2 PsiBlast_PDB 86.4738% -90 - C5 -1VLJ 11.0 ?
24 PsiBlast_CBE 85.9038% -91 - C5 -1VLJ 10.3 ?
28 HHSearch 72.1922% -67 - C5 -3OX4 - ADH2_ZYMMO -
33 HHSearch 72.1125% -86 - C5 -1O2D - ? -
29 HHSearch 71.6422% -72 - C5 -3BFJ - DHAT_KLEPN -
30 HHSearch 69.7820% -67 - C5 -1RRM - FUCO_ECOLI -
34 HHSearch 68.7822% -80 - C5 -3W5S - ? -
8 PsiBlast_PDB 68.5822% -55 - C5 -4FR2 - ? -
3 PsiBlast_PDB 68.5326% -66 - C5 -3OWO - ADH2_ZYMMO -
4 PsiBlast_PDB 68.1126% -65 - C5 -3OX4 - ADH2_ZYMMO -
9 PsiBlast_PDB 67.4122% -69 - C5 -2BI4 - FUCO_ECOLI -
7 PsiBlast_PDB 67.3526% -73 - C5 -3BFJ - DHAT_KLEPN -
10 PsiBlast_PDB 67.2922% -69 - C5 -2BL4 - FUCO_ECOLI -
12 PsiBlast_PDB 66.9623% -92 - C5 -3JZD - ? -