@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0564: (2016-03-16 )
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQLGLYGAIAGKALYNHHISMSDIVEVEQIAY

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_6(1H5Y)
HIS6_PYRAE
[Raw transfer]




GUO_A_2(5A5W)
?
[Raw transfer]




2ER_A_2(2Y88)
HIS4_MYCTU
[Raw transfer]




2ER_A_2(2Y88)
HIS4_MYCTU
[Raw transfer]




1PR_A_2(3ZS4)
HIS4_MYCTU
[Raw transfer]




137_C_16(2Y85)
HIS4_MYCTU
[Raw transfer]




137_D_21(2Y85)
HIS4_MYCTU
[Raw transfer]




GUO_A_2(5AHF)
?
[Raw transfer]




137_A_7(2Y85)
HIS4_MYCTU
[Raw transfer]




10 PsiBlast_PDB 90.4032%-100 - C2 -5A5W 9.4 ?
5 PsiBlast_PDB 90.3537%-118 - C- -2VEP - HIS4_STRCO -
22 PsiBlast_CBE 89.6437% -98 - C2 -4X9S - ? -
6 PsiBlast_PDB 88.1837%-108 - C2 -2X30 - HIS4_STRCO -
9 PsiBlast_PDB 88.0535%-113 - C2 -4AXK - HIS4_COREF -
25 PsiBlast_CBE 87.2435%-102 - C2 -2Y85 5.8 HIS4_MYCTU
7 PsiBlast_PDB 87.1633%-113 - C2 -5AHE - ? -
50 HHSearch 86.7434% -94 * C2 *2Y88 9.9 HIS4_MYCTU
8 PsiBlast_PDB 86.0033%-113 - C2 -5AHF 6.3 ?
23 PsiBlast_CBE 85.9635%-123 - C2 -4AXK - HIS4_COREF -
11 PsiBlast_PDB 85.9435%-101 - C2 -2Y85 5.5 HIS4_MYCTU
4 PsiBlast_PDB 85.9037% -98 - C2 -4W9T - ? -
1 PsiBlast_PDB 85.9036%-117 - C2 -4WD0 - HIS4_ARTAT -
24 PsiBlast_CBE 85.3235%-102 - C2 -2Y85 5.6 HIS4_MYCTU
13 PsiBlast_PDB 85.3234% -92 - C2 -2Y88 9.8 HIS4_MYCTU
12 PsiBlast_PDB 85.1635% -94 - C2 -3ZS4 7.4 HIS4_MYCTU
18 PsiBlast_PDB 83.3829%-109 - C2 -2W79 - HIS4_THEMA -
21 PsiBlast_CBE 83.1736% -92 - C2 -4X2R - ? -
14 PsiBlast_PDB 82.8834%-103 - C2 -2Y89 - HIS4_MYCTU -
17 PsiBlast_PDB 81.8530%-102 - C2 -2CFF - HIS4_THEMA -
19 PsiBlast_PDB 70.2530%-102 - C2 -1H5Y Error HIS6_PYRAE