@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0588: (2016-03-17 )
MTSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNPAQFITGSPSHQAFFASVAHFKQEVDKTALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLSRYLRTGEISVRTIWQALQENEATEGRAIFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEHYRGNI

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(1DNP)
PHR_ECOLI
[Raw transfer]




FAD_B_5(1DNP)
PHR_ECOLI
[Raw transfer]




FAD_A_3(1DNP)
PHR_ECOLI
[Raw transfer]




FAD_A_3(1DNP)
PHR_ECOLI
[Raw transfer]




FAD_C_3(1OWN)
PHR_SYNP6
[Raw transfer]




FAD_B_2(1QNF)
PHR_SYNP6
[Raw transfer]




FAD_C_3(1OWP)
PHR_SYNP6
[Raw transfer]




FAD_C_3(1OWO)
PHR_SYNP6
[Raw transfer]




FAD_D_4(1OWL)
PHR_SYNP6
[Raw transfer]




FAD_A_3(4U63)
PHRA_AGRFC
[Raw transfer]




FAD_C_3(1OWM)
PHR_SYNP6
[Raw transfer]




FAD_D_4(1OWL)
PHR_SYNP6
[Raw transfer]




TDR_C_3(1IQU)
PHR_THET8
[Raw transfer]




NACID_O_7(1TEZ)
PHR_SYNP6
[Raw transfer]

-

NACID_M_5(1TEZ)
PHR_SYNP6
[Raw transfer]

-

NACID_I_1(1TEZ)
PHR_SYNP6
[Raw transfer]

-

NACID_K_3(1TEZ)
PHR_SYNP6
[Raw transfer]

-

21 PsiBlast_CBE 91.2538% -57 - C4 -1DNP 12.2 PHR_ECOLI
1 PsiBlast_PDB 90.6038% -56 - C4 -1DNP 12.5 PHR_ECOLI
34 HHSearch 90.4936% -51 - C4 -1OWL 12.1 PHR_SYNP6
41 Fugue 89.4738% -52 - C4 -1DNP 12.5 PHR_ECOLI
28 PsiBlast_CBE 89.1431% -54 - C4 -1NP7 - CRYD_SYNY3 -
32 HHSearch 89.1238% -47 - C4 -1DNP 12.5 PHR_ECOLI
2 PsiBlast_PDB 88.5835% -48 - C4 -1TEZ 4.4 PHR_SYNP6
9 PsiBlast_PDB 88.3934% -43 - C4 -4U63 10.6 PHRA_AGRFC
11 PsiBlast_PDB 88.3131% -52 - C4 -1NP7 - CRYD_SYNY3 -
3 PsiBlast_PDB 88.2335% -45 - C4 -1OWL 12.1 PHR_SYNP6
22 PsiBlast_CBE 87.9435% -47 - C4 -1TEZ 3.7 PHR_SYNP6
23 PsiBlast_CBE 87.8835% -46 - C4 -1TEZ 4.0 PHR_SYNP6
24 PsiBlast_CBE 87.6035% -46 - C4 -1TEZ 4.4 PHR_SYNP6
8 PsiBlast_PDB 87.2335% -49 - C4 -1QNF 12.1 PHR_SYNP6
4 PsiBlast_PDB 87.1935% -46 - C4 -1OWM 12.3 PHR_SYNP6
5 PsiBlast_PDB 87.1435% -47 - C4 -1OWN 12.4 PHR_SYNP6
7 PsiBlast_PDB 86.9735% -45 - C4 -1OWP 12.8 PHR_SYNP6
6 PsiBlast_PDB 86.7335% -44 - C4 -1OWO 12.3 PHR_SYNP6
29 HHSearch 86.4329% -48 * C4 *1U3D - CRY1_ARATH -
12 PsiBlast_PDB 85.9930% -41 - C4 -1U3C - CRY1_ARATH -
15 PsiBlast_PDB 75.7731% -36 - C4 -1IQU 3.0 PHR_THET8