@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0595: (2016-03-17 )
MSNEYKFETIQVHGGHTPDGDTHSRAVPIYQTTSYTFDSPEHAAALFGLQETGNIYTRIMNPTTAVLEERLTLLEGGIGAVATASGMAAITYSILNIAGSGDHIVAAATLYGGTHTLFSHTFKTFGIDVTFVDPNEPENFEKAIKDNTKAVFIETIGNPDINIVDIEKVAKIAHASDIPLIVDNTFATAYLNRPFDFGADIVVYSATKFIGGHGVAIGGAVIDSGKFNWANGKFPKLVVPDDSYNGLSYTNDVGAAAYITKLRVSLLRDTGAALSPFNAFLLILGLETLSLRLEQHVKNAKQVANFLNDHPKVAWVNYPGLKDNKYHELAQKYLPKGPGSIFTFGVKGGYEAGKKVIESVELFSHLANVGDAKSLIIHPASTTHQQLSEEQQLTAGVKPESIRLSIGIENADDIIQDLTKALEQI

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_A_2(4HF8)
?
[Raw transfer]



LCS_A_2(4OMA)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PLP_B_4(2CTZ)
?
[Raw transfer]



NLE_A_2(3JWB)
?
[Raw transfer]



MPJ_A_2(3JWA)
?
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



ECX_A_2(3JW9)
?
[Raw transfer]
29 PsiBlast_CBE 92.7346% -98 - C1 -4OC9 - ? -
102 HHSearch 92.6852% -99 - C1 -2CTZ 4.6 ?
26 PsiBlast_CBE 92.6246% -98 - C1 -4OC9 - ? -
28 PsiBlast_CBE 92.3846% -97 - C1 -4OC9 - ? -
27 PsiBlast_CBE 92.1746% -98 - C1 -4OC9 - ? -
2 PsiBlast_PDB 92.1352% -99 - C1 -2CTZ 4.6 ?
3 PsiBlast_PDB 91.8646% -98 - C1 -4OC9 - ? -
24 PsiBlast_CBE 90.9552% -96 - C1 -2CTZ 4.7 ?
25 PsiBlast_CBE 89.5546%-103 - C1 -4OC9 - ? -
22 PsiBlast_CBE 88.5855%-106 - C1 -4KAM - ? -
107 HHSearch 88.5246%-101 - C1 -2RFV - ? -
6 PsiBlast_PDB 87.6743%-102 - C1 -3JW9 3.3 ?
10 PsiBlast_PDB 87.6543%-104 - C1 -3JWB 2.2 ?
4 PsiBlast_PDB 87.3343%-103 - C1 -4OMA 6.2 ?
11 PsiBlast_PDB 87.1943%-105 - C1 -2RFV - ? -
1 PsiBlast_PDB 86.9155%-106 - C1 -4KAM - ? -
5 PsiBlast_PDB 86.7643%-104 - C1 -4HF8 6.0 ?
9 PsiBlast_PDB 86.5643%-102 - C1 -3JWA 3.3 ?
21 PsiBlast_CBE 86.2655%-106 - C1 -4KAM - ? -
23 PsiBlast_CBE 85.9355%-101 - C1 -4KAM - ? -
7 PsiBlast_PDB 84.3943%-106 - C1 -3MKJ 4.8 ?
30 PsiBlast_CBE 81.1537%-100 - C1 -1E5F 3.7 ?
31 PsiBlast_CBE 80.8737%-102 - C1 -1E5E 4.6 ?
106 HHSearch 80.0339% -95 - C1 -1E5E 5.1 ?
14 PsiBlast_PDB 80.0137%-101 - C1 -1E5F 3.8 ?
13 PsiBlast_PDB 79.6037% -99 - C1 -1E5E 5.2 ?
115 HHSearch 77.8543%-108 - C1 -1PFF 2.0 ?
85 PsiBlast_CBE 77.1439%-110 - C1 -1PFF 2.0 ?