Study : Lmo0607 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

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Binding Site Number :C2_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C2_S1
Complex: ATP_J_5(4YMV) / Model_63(4YMV/J) = [4.1] Download780.2918.40MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA
Complex: ATP_A_6(4YMV) / Model_64(4YMV/A) = [4.1] Download649.6813.18MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA
Complex: ADP_A_5(2HYD) / Model_5(2HYD/A) = [4.7] Download1685.0129.50MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA
Complex: ATP_A_7(4YMU) / Model_66(4YMU/A) = [4.9] Download813.2720.71MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA
Complex: ATP_J_5(4YMU) / Model_65(4YMU/J) = [5.3] Download575.9720.71MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA
Consensus
[pKd Mean = 4.62]
-900
(s=401)
20
(s=5)
MKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGVVTGDTDYIWSTGMKMLLISFASVILSVIVVYLASRISMGFGKELRDKIFTKVEDFSLQEFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFVVVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKFEEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFIQYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSTPPAKLSFEHVTFRYEGAEKPVIEDITFEANAGETIAIIGSTGAGKSTLINMIPRFYDVESGVVKINGIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWEALRTAQAENFVSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLREALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGMGTHEELKESNQIYQEIMRSQLSEEEIA